Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0295.Seq
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.6  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.5  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   7.5  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   7.5  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   9.9  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   9.9  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 458 INLPKSSPGDVLNSFNSITQAM 523
           I+LP+S P DV+ S  S T AM
Sbjct: 208 IHLPRSLPADVIESAKSETPAM 229


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 680 HINKAIPPKAATTKNITKVISL*PPDLVSSFM 585
           H + + PP       + K +SL PP  VS F+
Sbjct: 233 HTHHSYPPNEHDVNAVQKALSLLPPPEVSDFL 264


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +2

Query: 47  GLQEFGTRRDARDLADP----QSIGSKIIIVPTRG 139
           G  E    RDARD+ +     + +GS+I++ P RG
Sbjct: 40  GFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARG 74


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -1

Query: 540 ILKRLHIACVIELKLFRTSPGLDLGKLMPARTVNVS----GLYVHITRKRRVLWVRIGRF 373
           IL+++H   +I++   +  PGL +G L     +N++      Y  + + +  L   + R 
Sbjct: 257 ILEKIHAQRLIDIAESKRKPGLSVGDLQTYLNLNIAPPCINFYERLKQSKPALMAEVKRA 316

Query: 372 S 370
           S
Sbjct: 317 S 317


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 54  RNSARGETHATSPTRSRLDRKSSLCPQEDFQPELSSAYPTR 176
           R   RG++ A +PT  R +R  S+ P +      +SA P R
Sbjct: 400 RGRKRGKSFAVTPTLHRNERSMSVLPFQ-LAKSFTSALPRR 439


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 431 PETLTVRAGINLPKSS 478
           P+TL+VR+G ++P SS
Sbjct: 66  PDTLSVRSGFSIPSSS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,934
Number of Sequences: 5004
Number of extensions: 69606
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)