Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0295.Seq
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           31   1.3  
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    31   1.3  
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    31   1.3  
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    31   1.3  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    30   2.3  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    28   7.1  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    28   7.1  
Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AL117207-3|CAB60391.1|  331|Caenorhabditis elegans Hypothetical ...    28   9.3  

>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 529 PFENQDMDYNELRPARLEAIKEETKSGGYSEITLVMFLVVAAFGGIALLIWKVVPQSAKD 708
           P++ Q  +   L P +  A++EE  S  +  + L++FL++ A  GI   +W    +  KD
Sbjct: 763 PYDGQYCE--RLNPEKFSAMEEEDSSL-WLIVLLLIFLIIVAVVGIIAFLWFSQQEHMKD 819

Query: 709 NASASTI 729
             S + +
Sbjct: 820 VISTARV 826


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 529 PFENQDMDYNELRPARLEAIKEETKSGGYSEITLVMFLVVAAFGGIALLIWKVVPQSAKD 708
           P++ Q  +   L P +  A++EE  S  +  + L++FL++ A  GI   +W    +  KD
Sbjct: 763 PYDGQYCE--RLNPEKFSAMEEEDSSL-WLIVLLLIFLIIVAVVGIIAFLWFSQQEHMKD 819

Query: 709 NASASTI 729
             S + +
Sbjct: 820 LISTARV 826


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 529 PFENQDMDYNELRPARLEAIKEETKSGGYSEITLVMFLVVAAFGGIALLIWKVVPQSAKD 708
           P++ Q  +   L P +  A++EE  S  +  + L++FL++ A  GI   +W    +  KD
Sbjct: 763 PYDGQYCE--RLNPEKFSAMEEEDSSL-WLIVLLLIFLIIVAVVGIIAFLWFSQQEHMKD 819

Query: 709 NASASTI 729
             S + +
Sbjct: 820 VISTARV 826


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 529 PFENQDMDYNELRPARLEAIKEETKSGGYSEITLVMFLVVAAFGGIALLIWKVVPQSAKD 708
           P++ Q  +   L P +  A++EE  S  +  + L++FL++ A  GI   +W    +  KD
Sbjct: 763 PYDGQYCE--RLNPEKFSAMEEEDSSL-WLIVLLLIFLIIVAVVGIIAFLWFSQQEHMKD 819

Query: 709 NASASTI 729
             S + +
Sbjct: 820 VISTARV 826


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 54  RNSARGETHATSPTRSRLDRKSSLCPQEDFQPELSSAYP 170
           RN +R  + + SP RSR D+K     QE+   E+    P
Sbjct: 46  RNRSRSRSRSRSPKRSRRDKKEEKQEQEEEDGEIRDTTP 84


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 278  SAQDAYILRIHHDECGSDVNET-TVATYVIVQENLPILTHSTRRFLVICTYKPETLTVRA 454
            +++  Y+ ++    C   + +  T+A+ V+VQ++   LT+    + + C Y   +  V +
Sbjct: 2403 NSRKPYVFKVVFQHCDVQLLDNHTMASTVVVQKHAMFLTNKADSYDLRCQYPIGSRAVES 2462

Query: 455  GINLPKSSPGDVLNSFNS 508
             +N+ + +    L   NS
Sbjct: 2463 HVNVSELATTSTLTEKNS 2480


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 108  PIDCGSARSR-ASRLVPNSCSPGDPLVLE 25
            P+ C +   R  ++ +PN C  G+PL LE
Sbjct: 1255 PVKCTTPECRPVAKCIPNMCGTGEPLALE 1283


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 287 DAYILRIHHDECGSDVNETTVATYVIVQENLPILTHSTR 403
           D Y   I  D  G ++NET  ATYVI  +N+  L  S R
Sbjct: 333 DTYTFYIRRD--GGEMNETRHATYVI-NDNIKALLESER 368


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 287 DAYILRIHHDECGSDVNETTVATYVIVQENLPILTHSTR 403
           D Y   I  D  G ++NET  ATYVI  +N+  L  S R
Sbjct: 333 DTYTFYIRRD--GGEMNETRHATYVI-NDNIKALLESER 368


>Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical
           protein H08M01.1 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 305 CVKCMRLVRCWDCLVWSPLWAAVRC 231
           C KC++++ C  C  W   W   RC
Sbjct: 288 CPKCLKMIGCAKCFRW---WTVFRC 309


>AL117207-3|CAB60391.1|  331|Caenorhabditis elegans Hypothetical
           protein Y60A3A.3 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 613 YSEITLVMFLVVAAFGGIALLIWKVVPQSAKDN 711
           Y + TL +F + +  G  + LIWK V +S +DN
Sbjct: 299 YRQATLEIFHLSSKRGANSQLIWKTVNRSQQDN 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,268,514
Number of Sequences: 27780
Number of extensions: 404777
Number of successful extensions: 1189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)