Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0295.Seq
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    26   0.37 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   2.0  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.9  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 325 PALVVMDA*NVCVLCAVGIASYGARSGPPSAASTAMRP 212
           P   VM A +  +  A+G A   A+SG   AA + MRP
Sbjct: 11  PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRP 48


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 598 FLPLWLQVSLVGVHYSPYLD 539
           F P WLQV  + +++SP  D
Sbjct: 650 FFPKWLQVLALWLNHSPNYD 669


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 735 RGYCRCRSVVFGALWD 688
           +G C CR   F  LWD
Sbjct: 76  KGVCICRKTSFKDLWD 91


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 210 QNKVPSTLATSLAWGKHWI 154
           Q   PSTL   L+W   W+
Sbjct: 205 QTFAPSTLVVMLSWFSFWL 223


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 260  WSPLWAAVRCLDGYATAKIRSRRHLPLRSRGVST 159
            W+P   AV   D  A +K R +  +    RG+ +
Sbjct: 1154 WTPKMMAVEPTDKQANSKTRRQEMMREAGRGIES 1187


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -3

Query: 679 ILIKLFPRKQLQPKTLPK*SHYNHLI*FLPLWLQVSLVGVHY 554
           +L ++ P   L    L K   +  ++  L +W+ V ++ VH+
Sbjct: 297 LLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWITVCVLNVHF 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,663
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)