Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0295.Seq
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK...    29   3.7  
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK...    28   6.5  
At1g07985.1 68414.m00870 Expressed protein                             28   6.5  
At1g01720.1 68414.m00090 no apical meristem (NAM) family protein...    28   6.5  

>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 505

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -1

Query: 555 IVHILILKRLHIACVIELKLFRTSPGLD 472
           I  I ILK+LH   VI+LK   TSPG D
Sbjct: 71  IREIKILKKLHHENVIQLKEIVTSPGRD 98


>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 513

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -1

Query: 555 IVHILILKRLHIACVIELKLFRTSPGLD 472
           I  I ILK+LH   VI LK   TSPG D
Sbjct: 71  IREIKILKKLHHENVIHLKEIVTSPGRD 98


>At1g07985.1 68414.m00870 Expressed protein
          Length = 144

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 20  GRSRTSGSPGLQEFGTRRDARDLADPQSIG 109
           G S  S SP     GT+  + DL+ P+SIG
Sbjct: 27  GSSPRSSSPSTPSSGTQPSSMDLSSPRSIG 56


>At1g01720.1 68414.m00090 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB:AAD17313 GI:4325282
           from [Arabidopsis thaliana]
          Length = 289

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 30  ELVDPPGCRNSARGETHATSPTRSRLDRKSSLCPQEDFQPELSSAYPTRAKWQ 188
           E+V PP  + ++      TS +  +L    S C ++   PE +S   +  KW+
Sbjct: 186 EMVMPPPPQQTSEFAYFDTSDSVPKLHTTDSSCSEQVVSPEFTSEVQSEPKWK 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,004
Number of Sequences: 28952
Number of extensions: 384307
Number of successful extensions: 974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)