Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0294.Seq
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.2
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 27 4.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 4.2
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 4.2
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 5.6
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 5.6
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 26 7.4
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 26 7.4
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 9.8
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 9.8
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -1
Query: 256 TLSQGLPSDTSFIRTPVSENAPFGLLVGVPFILS 155
+L+ LP+ S+ ++ NA GL++G+P ++S
Sbjct: 102 SLAVALPTSASYTQSLGGTNAFSGLVIGIPTLIS 135
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 386 DSRVNHHSYDSPP-GLTAKQTELYWQSLAERT 478
D +V+ H YD+PP GL +T +Y L T
Sbjct: 163 DGKVSCHLYDAPPSGLVEGRTSMYTLLLQNTT 194
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 4.2
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = +3
Query: 174 PTRRPKG-AFSETGVRIKEVSEGRPCDNVQSCAPDSSHTL-GERPASHAGVID*SIRCTM 347
PT P + +E I R ++QS +P+S T G RP S SI T
Sbjct: 134 PTTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPPSPT-----SITTT- 187
Query: 348 KNWARFETDSD-SATLESTITPMTVRPDSPLSRPS 449
T D S S T T R ++PLSRPS
Sbjct: 188 ------STSIDPSVAFSSKSTLATTRTNAPLSRPS 216
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 574 DHCKHIDEGHRKQYEDFVAARNEIALDIGIASQHHGSPLECIGCN 708
D H+ + ++QY+ A R +I ++G S + SP+ I N
Sbjct: 15 DTASHVSDTRKRQYQRDEALRKKIISELGKKSGNFESPVRKIRRN 59
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 251 QRPELCPGFVSHAWRKTCKSC-GCDR-LKHS 337
QR E F H W K C C CD+ L+HS
Sbjct: 27 QRRETPISFGGHMWHKDCFCCTKCDKGLEHS 57
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 80 TLSNLVPNSCSPGDPLVLERPPP 12
TL NL + + GD V+ERPPP
Sbjct: 752 TLQNLSVDLATLGDLKVVERPPP 774
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 178 PEGRKVHFLRRVCG*KKYQREDLATTSRAVPRIRLTRLEKDLQ 306
PEG H R+ ++ +EDLA S A R++ +D++
Sbjct: 112 PEGILTHGKHRLPTIPEWTKEDLAALSEAAARLQANPSPEDIE 154
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 406 VMVDSRVAESESVSNRAQFF 347
+ VD V ESES SNR Q F
Sbjct: 591 ISVDEAVGESESFSNRQQDF 610
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 215 HTRLRKCTFRPSGWSSIHPVSR-DQQSNKTTD 123
H RL C+ R S WS++ +S + N+ TD
Sbjct: 272 HQRLVSCSDRNSQWSTVDSLSNTSYKKNRYTD 303
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 235 SDTSFIRTPVSENAPFGLLVGVPFILSPVINNQTKRPTNRMPQNFF 98
SDT+ + TP+S+ G + SP I +++ P +P F
Sbjct: 382 SDTTNLNTPISDIPSPGSSTTCSNLSSPHIKRKSRSPPQSLPSTPF 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,115
Number of Sequences: 5004
Number of extensions: 70580
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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