Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0294.Seq
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 36 0.051
06_02_0259 + 13543869-13544243 32 0.63
01_05_0739 + 24807181-24809121 30 2.5
12_01_0613 + 5060150-5060320,5062255-5062359,5064057-5064143,506... 29 3.4
08_02_1181 - 24985963-24986242,24987109-24987197 29 4.4
01_03_0002 - 11506135-11506783,11506815-11506912 29 4.4
04_04_0191 + 23468410-23468455,23468560-23468699,23469119-234692... 29 5.9
02_02_0327 - 8983983-8985878 29 5.9
11_06_0286 + 21945699-21946213,21946255-21947542 28 7.8
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 28 7.8
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 35.5 bits (78), Expect = 0.051
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 280 DESGAQLWTLSQGLPSDTSFIRTPVSENAPFGLLVGVPFILSPVIN-NQTKRPTNRMPQN 104
+ SG L +++ + PV FGL +GVP+ I+ T NR+P+
Sbjct: 1245 ESSGESLDSMTYTFELCDCVVLFPVENQHFFGLRLGVPYFFGEFISTGSTAEFANRIPKE 1304
Query: 103 FFTDTCGIHCR 71
FF+ C + R
Sbjct: 1305 FFSSECMVSSR 1315
>06_02_0259 + 13543869-13544243
Length = 124
Score = 31.9 bits (69), Expect = 0.63
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 431 TAKQTELYWQSLAERTPTSTGGATGQRRGVLG 526
T +Q + W+ A T GG G RRGVLG
Sbjct: 55 TGEQWSVQWEGAALATGAGRGGDVGNRRGVLG 86
>01_05_0739 + 24807181-24809121
Length = 646
Score = 29.9 bits (64), Expect = 2.5
Identities = 28/94 (29%), Positives = 39/94 (41%)
Frame = +2
Query: 44 PGCRNSARGSTVYSTSVREKVLWHPIGRSFCLIVDHGRQDEWNSNQKAERCIF*DGCADK 223
PGC+ A G T+Y + +G C GR D ++ RC DGC+
Sbjct: 291 PGCQKGAEGRTIYCKAHGGGRRCQFLG---CTKSAEGRTDHCIAHGGGRRCSH-DGCS-- 344
Query: 224 RSIRGKTLRQRPELCPGFVSHAWRKTCKSCGCDR 325
R+ RGK+ LC + H K C+ C R
Sbjct: 345 RAARGKS-----GLC---IRHGGGKRCQKENCIR 370
>12_01_0613 +
5060150-5060320,5062255-5062359,5064057-5064143,
5064265-5064318,5064402-5064547,5064651-5064804,
5064891-5065028,5065454-5065527,5065615-5065756,
5066396-5066474,5067326-5067423
Length = 415
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -1
Query: 511 PLTSGATCTSRSTLSERLPVQLGLLSGESGRTVIGVMVDSRVAESESVSNRAQFFMVHRM 332
PL A C S SER VQL LL+ SG I V+ S V + +Q +
Sbjct: 88 PLLLNAACDETSEKSERAFVQL-LLTSASGNNNIEVLKQSAVDYINGSDSASQALLPREQ 146
Query: 331 LQSI 320
L+ +
Sbjct: 147 LEKL 150
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 215 HTRLRKCTFRPSGWSSIHPVSR-DQQSNKTTDQSDATKLFHGHLWNTLSNLVP 60
H RL CTF+ ++I + + Q++ TTD KL + H+W++ VP
Sbjct: 24 HKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL-NKHIWSSGIRSVP 75
>01_03_0002 - 11506135-11506783,11506815-11506912
Length = 248
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 2 EPTAVAAALELVDPPGCRNSARGSTVY 82
+PTA AAAL L + PG R R + V+
Sbjct: 178 KPTAAAAALSLAEAPGRRRKGRPAPVH 204
>04_04_0191 +
23468410-23468455,23468560-23468699,23469119-23469201,
23469346-23469550,23469632-23469735,23470290-23470449
Length = 245
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 190 KVHFLRRVCG*KKYQREDLATTSRAVPRIRLTRLEK 297
+V F R VC + +L T SRA P + + RL K
Sbjct: 181 EVKFFRNVCNVLRLMESNLVTRSRANPEVLVPRLLK 216
>02_02_0327 - 8983983-8985878
Length = 631
Score = 28.7 bits (61), Expect = 5.9
Identities = 28/94 (29%), Positives = 39/94 (41%)
Frame = +2
Query: 44 PGCRNSARGSTVYSTSVREKVLWHPIGRSFCLIVDHGRQDEWNSNQKAERCIF*DGCADK 223
P C+ A GST + G C HG ++ +RC+ +GC
Sbjct: 397 PDCKKGAEGSTAFCKGHGGGKRCSAEG---CTKSVHGGTLCCVAHGGGKRCVV-EGCT-- 450
Query: 224 RSIRGKTLRQRPELCPGFVSHAWRKTCKSCGCDR 325
+S RG+T R C G H K C+S GCD+
Sbjct: 451 KSARGRTDR-----CVG---HGGGKRCQSSGCDK 476
>11_06_0286 + 21945699-21946213,21946255-21947542
Length = 600
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 225 EVSEGRPCDNVQSCAPDSSHTLGERPASHAGVID 326
E+ G+P N +C PD + HAGV+D
Sbjct: 59 ELRGGKPDKNQATCEPDVPPDKNQATGEHAGVMD 92
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 92 HLWNTLSNLVPNSCSPGDPLVLERPPP 12
H W + PN GDP V+ PPP
Sbjct: 24 HQWESQGFFKPNFDRGGDPFVIPMPPP 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,741,112
Number of Sequences: 37544
Number of extensions: 526602
Number of successful extensions: 1626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -