Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0294.Seq
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.64 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   4.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.8  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 230 YFFYPHTRLRKCTFRPSGWSSIHPVSRDQQSNKTTDQS 117
           Y  Y HT  +K     S   S  P SRD+ +   T ++
Sbjct: 67  YIKYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTSKT 104


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 521 ARHAADQWR 495
           ARHAAD+WR
Sbjct: 861 ARHAADKWR 869


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 568 TLDHCKHIDEGHRKQYEDFV 627
           TL H      GHRK YE +V
Sbjct: 154 TLHHGMAYHRGHRKDYERWV 173


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = -2

Query: 813 SNSSHSEQEKHAGWKKRSSPILGARIVMLPLLNRLIAANAFQRRSMMLTSDTDIKSNFIP 634
           S S      +H+G    +SP       M P ++   A +  Q++  +  +     S+ +P
Sbjct: 61  SPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVP 120

Query: 633 G 631
           G
Sbjct: 121 G 121


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 169 PFILSPVINNQTKRPTN 119
           P +LSP +NN    PT+
Sbjct: 194 PRVLSPPLNNNDATPTD 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,246
Number of Sequences: 438
Number of extensions: 5125
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)