Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0294.Seq
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27480.1 68416.m03436 DC1 domain-containing protein contains ...    33   0.17 
At1g32390.1 68414.m03996 hypothetical protein                          30   2.1  
At1g18550.1 68414.m02314 kinesin motor protein-related contains ...    30   2.1  
At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)...    29   2.8  
At2g48110.1 68415.m06022 expressed protein                             29   3.7  
At4g25190.1 68417.m03626 hypothetical protein  contains Pfam pro...    29   4.9  
At3g12530.1 68416.m01559 DNA replication protein-related similar...    29   4.9  
At2g11620.1 68415.m01249 hypothetical protein                          29   4.9  
At5g49740.1 68418.m06159 ferric reductase-like transmembrane com...    28   6.5  
At4g11710.1 68417.m01869 hypothetical protein                          28   6.5  
At5g64550.1 68418.m08112 loricrin-related contains weak similari...    28   8.6  

>At3g27480.1 68416.m03436 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 604

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +2

Query: 278 VSHAWRKTCKSCGCDRLKHSVYHEELGSVRD-RLGLRDSRVNHHSYDSPPGLT----AKQ 442
           + H   KTC+SCG D  K  +   +     D R       V+   YD  P LT     K 
Sbjct: 497 LQHGHFKTCQSCGIDHTKVVIGCLKCNYFLDFRCATLPLTVSLPRYDDHP-LTLCYGEKS 555

Query: 443 TELYWQSLAER-TPTSTGGATGQRRGV 520
           ++ YW  + ER T T T   TG   GV
Sbjct: 556 SDKYWCDICERETNTETWFYTGSESGV 582


>At1g32390.1 68414.m03996 hypothetical protein
          Length = 192

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/42 (23%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 622 FVAARNEIALDIGIASQHHGSPLECIGCNKSIQKRQH-YYSC 744
           ++A RN +++   + + ++G+P  C+ C+  ++ R H ++ C
Sbjct: 83  WLAVRNRLSMVDRMMTWNNGTPTTCVFCSSPMETRDHLFFQC 124


>At1g18550.1 68414.m02314 kinesin motor protein-related contains
           similarity to kinesin-related protein GI:4493964 from
           [Plasmodium falciparum]
          Length = 799

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 329 KHSVYHEELGSVRDRLGLRDSRVNHHSYDSPPGLTAKQTELYWQSLAERTPTSTGGATG 505
           K  VY  E  +  D L L+  RV H ++DS    T  Q E+Y  +  +       G  G
Sbjct: 179 KRDVYLTEFTNENDYLRLKRLRVRHFTFDSSFPETTTQQEVYSTTTGDLVEAVLEGRNG 237


>At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P11931 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (VALRS)
           {Bacillus stearothermophilus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 970

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -3

Query: 191 FRPSGWSSIHPVSRDQQSNKTTDQSDATKLFHGHLWNTLSNLVPNSCSPGDPLVLERPPP 12
           F  S  +S + V    +++KT D S   K++    W +     PN    G P V+  PPP
Sbjct: 52  FSFSAAASGNNVFTSPETSKTFDFSSEEKIYKW--WESQGYFKPNFDQGGSPFVIPMPPP 109


>At2g48110.1 68415.m06022 expressed protein
          Length = 1295

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 566 LHWIIASTSTKATASNMKISSPPGMKLLLISVSLVNIMDLRWNALA-AISRFRSGSITIL 742
           LHW +    T A+A  + + SP   + L+  +   N   L W  L  AIS      + +L
Sbjct: 29  LHWALQLRLTLASAG-ISLPSPDLAQFLVTHIFWENHSPLSWKLLEKAISVNIVPPLLVL 87

Query: 743 A---PRIGEERFFHPACF 787
           A   PR+   R  HPA +
Sbjct: 88  ALLSPRVIPNRKLHPAAY 105


>At4g25190.1 68417.m03626 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 443

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 551 YQSRILHWIIASTSTKATASNMKIS 625
           +Q+R+L W   +  T+AT +N+KI+
Sbjct: 205 FQNRLLQWRFVNARTEATMANLKIN 229


>At3g12530.1 68416.m01559 DNA replication protein-related similar to
           DNA replication protein Psf2 (GI:29365481) [Xenopus
           laevis]; contains Pfam profile PF04128: Domain of
           unknown function (DUF392)
          Length = 191

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 209 RLRKCTFRPSGWSSIHPVSRDQQSNKTTDQS 117
           R  KCTFRP GW S+  +++  ++ + +  +
Sbjct: 46  RRGKCTFRPPGWMSVDNLTQILEAERESQST 76


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 137 NKTTDQSDATKLFHGHLWNTLSNLVPNSCSPGDPLV 30
           NK    +D    FH + W+T +N +P  C+ G P V
Sbjct: 50  NKLQIPNDQQNQFHSYQWSTTTNHIP--CTRGAPTV 83


>At5g49740.1 68418.m06159 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 747

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 551 YQSRILHWIIASTSTKATASNMKISSPPGMKLLLISVSLVNIMDLRW 691
           YQSR    +I++ S       + +S PP M+   +S   + + +L W
Sbjct: 336 YQSRRTVDVISAKSLPCGTLELVLSKPPNMRYNALSFIFLQVKELSW 382


>At4g11710.1 68417.m01869 hypothetical protein
          Length = 473

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 622 FVAARNEIALDIGIASQHHGSPLECIGCNKSIQKRQH-YYSC 744
           ++A  N ++    +   + G    CI CNK+++ R H ++SC
Sbjct: 323 WLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSC 364


>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
           to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
          Length = 634

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 27/93 (29%), Positives = 37/93 (39%)
 Frame = +2

Query: 47  GCRNSARGSTVYSTSVREKVLWHPIGRSFCLIVDHGRQDEWNSNQKAERCIF*DGCADKR 226
           GC   A GST    +          G   C    HG      ++   +RC+   GC   +
Sbjct: 371 GCTKGAEGSTPLCKAHGGGKRCMFDGGGICPKSVHGGTSFCVAHGGGKRCVV-AGCT--K 427

Query: 227 SIRGKTLRQRPELCPGFVSHAWRKTCKSCGCDR 325
           S RG+T     + C   V H   K CKS GC++
Sbjct: 428 SARGRT-----DCC---VKHGGGKRCKSDGCEK 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,669
Number of Sequences: 28952
Number of extensions: 393838
Number of successful extensions: 1196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)