Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0293.Seq
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 132 6e-32
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 75 9e-15
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 71 2e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 68 2e-12
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 28 1.4
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 2.4
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 4.2
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 5.6
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 7.4
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 7.4
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 7.4
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 9.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 132 bits (319), Expect = 6e-32
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = +3
Query: 261 FWEVISDEHGIDPSGCYHGDSDLQLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSG 440
FW I+DEHG+D +G YHG S+ Q ER+NVY+NEA+ GKYVPR VL+DL+P TMDAV+SG
Sbjct: 20 FWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSG 79
Query: 441 PFGCLFRPDNFVYGQNCAANNWAR 512
FG LFRPDN +YGQ+ A N WA+
Sbjct: 80 KFGNLFRPDNIIYGQSGAGNIWAK 103
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/74 (45%), Positives = 44/74 (59%)
Frame = +1
Query: 598 FQMSHXXXXXXXXXXXXXXVNRIREEYPDRIILTFSVFPSPRVSDCVVEPYNTTLRSISW 777
FQ++H +++IREEYPDR++ TFSV P+P+ SD VVEPYN TL
Sbjct: 133 FQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQL 192
Query: 778 SRILIHTFCLDNEA 819
TFC+DNEA
Sbjct: 193 VENSDETFCIDNEA 206
Score = 52.8 bits (121), Expect = 6e-08
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 494 GQQLGKGHYTEGVEILESALDVIRREAEGCDCLQVFR 604
G KGHYTEG E+ ++ LDV+RREAE CD LQ F+
Sbjct: 98 GNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQ 134
Score = 32.7 bits (71), Expect = 0.064
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 205 MREIINLQVGSCGNQIG 255
MREI+++Q G CGNQ+G
Sbjct: 1 MREIVHIQAGQCGNQVG 17
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 75.4 bits (177), Expect = 9e-15
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +3
Query: 264 WEVISDEHGIDPSGCYHGDSDLQLER--INVYYNEASAGKYVPRTVLIDLKPATMDAVRS 437
WE+ EHGI P+G + ++ Q + +++E GKYVPR++ +DL+P +D VR+
Sbjct: 21 WELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRT 80
Query: 438 GPFGCLFRPDNFVYGQNCAANNWAR 512
GP+ LF P+ + G+ A+NN+AR
Sbjct: 81 GPYRDLFHPEQLITGKEDASNNYAR 105
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +1
Query: 655 VNRIREEYPDRIILTFSVFPSPRVSDCVVEPYNTTLRSISWSRILIHTFCLDNEA 819
+ R+ EY + L FSV+P+P+VS VVEPYN+ L + + + TF +DNE+
Sbjct: 154 LERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNES 208
Score = 35.5 bits (78), Expect = 0.009
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 509 KGHYTEGVEILESALDVIRREAEGCDCLQVF 601
+GHYT G E+++ D IRR A+ C LQ F
Sbjct: 105 RGHYTVGKELVDEVTDKIRRIADNCSGLQGF 135
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 71.3 bits (167), Expect = 2e-13
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Frame = +3
Query: 264 WEVISDEHGIDPSGC------YHGDSDLQLERINVYYNEASAGKYVPRTVLIDLKPATMD 425
WE+ EHGI P G H ++ + +++E GK+VPR++ +DL+P +D
Sbjct: 21 WELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVID 80
Query: 426 AVRSGPFGCLFRPDNFVYGQNCAANNWAR 512
VR+GP+ LF P+ V G+ A+NN+AR
Sbjct: 81 QVRTGPYKDLFHPEQMVTGKEDASNNYAR 109
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 655 VNRIREEYPDRIILTFSVFPSPRVSDCVVEPYNTTLRSISWSRILIHTFCLDNEA 819
+ R+ EY + L FSV+P+P+VS VVEPYN+ L + + TF +DNEA
Sbjct: 158 LERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEA 212
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 509 KGHYTEGVEILESALDVIRREAEGCDCLQVF 601
+GHYT G E+++S L+ IRR A+ C LQ F
Sbjct: 109 RGHYTVGKEMIDSVLERIRRMADNCSGLQGF 139
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 205 MREIINLQVGSCGNQIGES 261
MRE+I++ VG G QIG +
Sbjct: 1 MREVISVHVGQAGVQIGNA 19
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 67.7 bits (158), Expect = 2e-12
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +3
Query: 258 KFWEVISDEHGIDPSGCYHGDSDLQLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRS 437
+FW+ + EHGI P G + ++R +V++ ++ +Y+PR +LIDL+P ++ + S
Sbjct: 20 QFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILS 79
Query: 438 GPFGCLFRPDNFVYGQN--CAANNWA 509
+G L+ P+N + +N A NNWA
Sbjct: 80 DTYGSLYNPENILITKNGGGAGNNWA 105
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +1
Query: 655 VNRIREEYPDRIILTFSVFP-SPRVSDCVVEPYNTTL 762
+ R+ + YP +II T+SVFP S VSD VV+PYN+ L
Sbjct: 154 LERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLL 190
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 208 REIINLQVGSCGNQIG 255
REII LQ G CGNQIG
Sbjct: 3 REIITLQAGQCGNQIG 18
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 503 LGKGHYTEGVEILESALDVIRREAEGCDCLQV 598
L +GH GVE++ + D +R+++E L+V
Sbjct: 182 LAEGHPDVGVELVRAGADTLRKDSENHTALEV 213
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 213 NYQSPGRFLWKPNR-GKFWEVISDEHGI 293
NY GRF+W R G WEV H I
Sbjct: 513 NYSDDGRFVWFGTRDGMLWEVDVQNHHI 540
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 204 DEGNYQS-PGRFLWKPNRGKFWEVISDEHGIDPS-GCYHGDSDLQL 335
DEG QS G W P + KF +I+DE G S G+S ++L
Sbjct: 703 DEGIEQSRKGGQRWDPKKKKFVNIINDEDGSKGSPKIIRGESGVKL 748
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 273 SPPRTFPDLVSTRTDLEIDNFPHLVNLSISRHRYL 169
SPP++ P S++ D +PH + +S S RYL
Sbjct: 290 SPPQSSPSAQSSQP-FSRDKYPHSMTVSPSNARYL 323
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 314 RRLRPATRKDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVG-TLRMPIQT 463
R+ +P +R+D R+ + +G E C H D G++ L++P +T
Sbjct: 219 RKNQPRSRRDPRLSWKALGGEYCHFHLYKENRDSMDCLGKIARLLKVPTRT 269
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 280 TSTASIQADATTATPTCN---SKGSTCTTT 360
TST S+ +TTAT +C S ST TTT
Sbjct: 757 TSTGSVTTTSTTATASCTLPISYTSTPTTT 786
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 314 RRLRPATR-KDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVGTLR 448
R RP + KD + Q+GI S G+Y L G D V LR
Sbjct: 283 RTKRPVMKIKDAHLPQQGISCLSFSQDGNYLLSRGEDNALRVWDLR 328
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 730 PTLGDLERLKRSV*FCRDTLRVSCSRVAYLIRNRYRHLASVTS-ENLQAIAALSFPSNDI 554
P L L + CR +S S + L+ +R HL S++ EN+ ++ L N I
Sbjct: 379 PQLCSLNLASNKITGCRTFYHISLSHLQILVLSR-NHLTSLSGLENVPSLEKLDIRDNSI 437
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 185 EIDKLTR*GKLSISRSVLVETKSGKVL 265
E D++ + G+L R +LV+TK G+++
Sbjct: 448 EPDRIVQKGRLYPGRMLLVDTKEGRIV 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,533
Number of Sequences: 5004
Number of extensions: 66234
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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