Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0292.Seq
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    54   3e-08
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    29   1.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   1.9  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    26   7.5  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   9.9  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 28/84 (33%), Positives = 47/84 (55%)
 Frame = -3

Query: 507  VTEKMYRRLLMLQNVMNNYYCHIAGLNPRAFRTYKASXXXXXXXXXXGVLDGDLVALYAA 328
            +++++YRRL ++QN + N    I GLNP+++R    +           +LDG L+  +  
Sbjct: 1350 ISDRVYRRLNIIQNYLANRVNTIGGLNPKSYRL--ITSPSNLTNPTRRILDGMLIDYFTY 1407

Query: 327  MPRAXQHDIAKKIGTKVEEIMSDL 256
            M  A +H++A K G  V  IM+DL
Sbjct: 1408 MSVAHRHEMAHKCGVPVSTIMNDL 1431


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 363  VLDGDLVALYAAMPRAXQHDIAKKIGTKVEEI 268
            V+DGDL  +Y ++P   Q  IA ++   + E+
Sbjct: 1163 VIDGDLCEMYYSLPHPVQEMIANELDRTIAEV 1194


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 558 TRQHVHDPGRRHRLRAAVTEKMYRRLLMLQNVMNNYYCH 442
           +++H H+    H       EK     + LQN+ N+++CH
Sbjct: 537 SQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHHCH 575


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 487 PVHLLRDRST*PMAPSRVVNMLTCRLCELSESGS 588
           P H + D S       RVV++LT R+ E+  S S
Sbjct: 200 PTHPIADTSIKDSIKKRVVSVLTSRVIEIDNSPS 233


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = -2

Query: 739 PGQRKPEGNFALFMYQPQARXELP--RPAXXTQERLP---PWPSRCTPCSASTCARCQTP 575
           P Q  PE NF+L    PQ     P  +      E +P   P P    P ++STC    + 
Sbjct: 223 PNQYNPEPNFSLSSGYPQQHFSQPELQNRNVHLETVPESYPVPPSGYPLTSSTCVSSISQ 282

Query: 574 TTRTSD 557
             +++D
Sbjct: 283 PIQSTD 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,058
Number of Sequences: 5004
Number of extensions: 47112
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)