Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0292.Seq
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0034 - 9941920-9942034,9942721-9942774,9943003-9943349 35 0.091
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 30 2.0
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 30 2.6
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 29 4.5
02_05_0581 - 30122279-30123124 29 4.5
08_02_0209 + 14321313-14321750 29 6.0
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338... 28 7.9
05_03_0458 + 14280953-14281866,14281964-14282912 28 7.9
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 28 7.9
>04_03_0034 - 9941920-9942034,9942721-9942774,9943003-9943349
Length = 171
Score = 34.7 bits (76), Expect = 0.091
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Frame = -3
Query: 513 AAVTEKMYRRLLMLQNVMNNYYCHIAGLNPRAFRTYKASXXXXXXXXXXGVLD------- 355
A + E +RRL LQ + + H+ GLNPR+FR + S ++D
Sbjct: 59 APIDELTFRRLQSLQRKLVDAVPHVCGLNPRSFRQFH-SNGKGHRPGPDNIIDFELLAQS 117
Query: 354 -----------GDLVALYAAMPRAXQHDIAKKIGTKVEEIMSDLS 253
G ++ Y + Q D+A++IGT +I+S+ S
Sbjct: 118 CPWEDSCLLCMGSVIGSYEMLSLDEQLDVAQQIGTTRSQILSNFS 162
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 694 QPQARXELPRPAXXTQERLPPWPSRCT-PCSASTCARCQTPTT 569
Q QA +PR A +E LPP P T P S S A+ + P T
Sbjct: 742 QAQANQNMPRQAAAPREHLPPPPPLTTLPTSDSGSAKERLPPT 784
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 29.9 bits (64), Expect = 2.6
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Frame = -2
Query: 739 PGQRKPEGNFALFMYQPQARXELPRP--AXXTQERLPPWPSRCTPCSASTCARCQTP-TT 569
P R+P +F + QP A P P + + LPP P S C C P
Sbjct: 391 PRSRRP--SFPPLVQQPIAMSSWPPPPPVQLSMQFLPPRPEPAAAARTSICCTCGVPMAP 448
Query: 568 RTSDTSA-CSRPWTAP*ATCCGHGEDVPAPTDVAERHEQLLLPHSRPQ-PEGLS 413
++T A C R A H + V P+ + H L + P+ PE +S
Sbjct: 449 NAANTCALCIRSRVDIAAGVPRHADVVHCPSCSSYLHPPRLWLRAAPESPELMS 502
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 733 QRKPEGNFALFMYQPQARXELPRPAXXTQERLPPWPSRCTPC 608
+ KPE A+ + +P A P P +E PP P + PC
Sbjct: 199 EEKPEPPPAVIIVEPPAPAPEPEPEPPKKEPPPPPPPKQEPC 240
>02_05_0581 - 30122279-30123124
Length = 281
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 595 CARCQTPTTRTSDTSACSRPWTAP*ATC-CGHGEDVPAPTDVAERHEQL 452
C+RC P +R +TS + A A C C +P AE E+L
Sbjct: 66 CSRCNQPRSRGGETSMATAAAAAAAAKCRCSRRRRLPEREWTAEEDERL 114
>08_02_0209 + 14321313-14321750
Length = 145
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 745 RFPGQRKPEGNFALFMYQPQARXELPRPA 659
+FPG KP +L + QP+A+ LP P+
Sbjct: 89 KFPGVDKPAPPISLVLLQPRAQLVLPPPS 117
>08_01_0381 -
3382316-3382459,3382872-3382907,3383323-3383429,
3383518-3383587,3383839-3384663,3384748-3385044,
3385175-3385501,3385760-3386046,3386728-3386896
Length = 753
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 721 EGNFALF-MYQPQA-RXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSA 548
+G + L+ +++ Q + E P P + P PSR TP + TP R S SA
Sbjct: 152 QGGYVLYRLFRKQEEKIERPSPDEVDRSGYSPTPSRSTPDNMEPIEDGNTPLNRESPESA 211
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 637 PPWPSRCTPCSASTCARCQTPTTRTSDTSACSRPWTA 527
PP PS T SAS+ PT R++ +S CS P +A
Sbjct: 92 PPPPSPTTSPSASSLP--PVPTPRSASSSKCSAPTSA 126
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -2
Query: 670 PRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACSRPWTAP*ATCCGHGEDV 491
PRP PP P+R ++S A +P +S +S S P P A G G++
Sbjct: 24 PRPGAYADRLRPPLPARRWRVASSAAASGGSPDLPSSSSS--SSPPPTPAAASFGSGDEQ 81
Query: 490 PA 485
A
Sbjct: 82 AA 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,606,985
Number of Sequences: 37544
Number of extensions: 402737
Number of successful extensions: 1042
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -