Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0292.Seq
(827 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenyl... 69 3e-11
AB046744-1|BAB21613.1| 216|Homo sapiens polyadenylation specifi... 69 3e-11
U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylat... 66 1e-10
AF059319-1|AAG43116.1| 161|Homo sapiens My003 protein protein. 33 0.95
BC021908-1|AAH21908.1| 485|Homo sapiens zinc finger, DHHC-type ... 32 2.9
U07802-1|AAA91778.1| 482|Homo sapiens Tis11d protein. 31 3.9
D21090-1|BAA04652.1| 409|Homo sapiens XP-C repair complementing... 31 5.1
BC020973-1|AAH20973.1| 409|Homo sapiens RAD23B protein protein. 31 5.1
AY165178-1|AAN47194.1| 409|Homo sapiens RAD23 homolog B (S. cer... 31 5.1
AL137852-2|CAD13275.1| 409|Homo sapiens RAD23 homolog B (S. cer... 31 5.1
AK223479-1|BAD97199.1| 409|Homo sapiens UV excision repair prot... 31 5.1
BC005010-1|AAH05010.1| 497|Homo sapiens ZFP36L2 protein protein. 31 6.7
AC010883-1|AAY14992.1| 494|Homo sapiens unknown protein. 31 6.7
BC074982-1|AAH74982.1| 159|Homo sapiens keratin associated prot... 30 8.9
BC074981-1|AAH74981.1| 159|Homo sapiens keratin associated prot... 30 8.9
BC074919-1|AAH74919.1| 159|Homo sapiens keratin associated prot... 30 8.9
BC074918-1|AAH74918.1| 159|Homo sapiens keratin associated prot... 30 8.9
AL135842-3|CAI23350.1| 118|Homo sapiens late cornified envelope... 30 8.9
AJ406950-1|CAC27589.1| 159|Homo sapiens keratin associated prot... 30 8.9
AJ406947-1|CAC27586.1| 159|Homo sapiens keratin associated prot... 30 8.9
>BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenylation
specific factor 1, 160kDa protein.
Length = 1443
Score = 68.5 bits (160), Expect = 3e-11
Identities = 56/176 (31%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Frame = -3
Query: 762 VDNTNLGFLVSEXXXXXXXXXXXXXXXXXSYLGQRXIRKSDYHLGPAGAR--HVPHXXXX 589
VDN LGFLVS+ + G R +R++D+H+G P
Sbjct: 1262 VDNAQLGFLVSDRDRNLMVYMYLPEAKES-FGGMRLLRRADFHVGAHVNTFWRTPCRGAT 1320
Query: 588 XXXXXXXXXATRQHVH-----DPGRRHRLRAAVTEKMYRRLLMLQNVMNNYYCHIAGLNP 424
+H+ D G L + EK YRRLLMLQN + H AGLNP
Sbjct: 1321 EGLSKKSVVWENKHITWFATLDGGIG--LLLPMQEKTYRRLLMLQNALTTMLPHHAGLNP 1378
Query: 423 RAFRTYKASXXXXXXXXXXGVLDGDLVALYAAMPRAXQHDIAKKIGTKVEEIMSDL 256
RAFR VLDG+L+ Y + + ++AKKIGT + I+ DL
Sbjct: 1379 RAFRMLHVD-RRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDL 1433
>AB046744-1|BAB21613.1| 216|Homo sapiens polyadenylation
specificity factor protein.
Length = 216
Score = 68.5 bits (160), Expect = 3e-11
Identities = 56/176 (31%), Positives = 75/176 (42%), Gaps = 7/176 (3%)
Frame = -3
Query: 762 VDNTNLGFLVSEXXXXXXXXXXXXXXXXXSYLGQRXIRKSDYHLGPAGAR--HVPHXXXX 589
VDN LGFLVS+ + G R +R++D+H+G P
Sbjct: 35 VDNAQLGFLVSDRDRNLMVYMYLPEAKES-FGGMRLLRRADFHVGAHVNTFWRTPCRGAT 93
Query: 588 XXXXXXXXXATRQHVH-----DPGRRHRLRAAVTEKMYRRLLMLQNVMNNYYCHIAGLNP 424
+H+ D G L + EK YRRLLMLQN + H AGLNP
Sbjct: 94 EGLSKKSVVWENKHITWFATLDGGIG--LLLPMQEKTYRRLLMLQNALTTMLPHHAGLNP 151
Query: 423 RAFRTYKASXXXXXXXXXXGVLDGDLVALYAAMPRAXQHDIAKKIGTKVEEIMSDL 256
RAFR VLDG+L+ Y + + ++AKKIGT + I+ DL
Sbjct: 152 RAFRMLHVD-RRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDL 206
>U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylation
specificity factor protein.
Length = 1442
Score = 66.5 bits (155), Expect = 1e-10
Identities = 55/175 (31%), Positives = 74/175 (42%), Gaps = 6/175 (3%)
Frame = -3
Query: 762 VDNTNLGFLVSEXXXXXXXXXXXXXXXXXSYLGQRXIRKSDYHLGP-AGARHVPHXXXXX 586
VDN LGFLVS+ + G R +R++D+H+G
Sbjct: 1262 VDNAQLGFLVSDRDRNLMVYMYLPEAKES-FGGMRLLRRADFHVGAHVNTFWRTPCRATE 1320
Query: 585 XXXXXXXXATRQHVH-----DPGRRHRLRAAVTEKMYRRLLMLQNVMNNYYCHIAGLNPR 421
+H+ D G L + EK YRRLLMLQN + H AGLNPR
Sbjct: 1321 GLSKKSVVWENKHITWFATLDGGIG--LLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPR 1378
Query: 420 AFRTYKASXXXXXXXXXXGVLDGDLVALYAAMPRAXQHDIAKKIGTKVEEIMSDL 256
AFR VLDG+L+ Y + + ++AKKIGT + I+ DL
Sbjct: 1379 AFRMLHVD-RRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDL 1432
>AF059319-1|AAG43116.1| 161|Homo sapiens My003 protein protein.
Length = 161
Score = 33.5 bits (73), Expect = 0.95
Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -2
Query: 637 PPWPSRCTPCSASTC----ARCQTPTTRTSDTSA 548
PPW RCT C A ARC + TTRTS TSA
Sbjct: 128 PPW-LRCTLCPAVLIRIIVARCSSGTTRTSSTSA 160
>BC021908-1|AAH21908.1| 485|Homo sapiens zinc finger, DHHC-type
containing 1 protein.
Length = 485
Score = 31.9 bits (69), Expect = 2.9
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 670 PRPAXXTQERLPPWPSRCTPCS--ASTCARCQTPTTRTSDTSACSRPWTAP*ATCCGHGE 497
P A + R+P P+ CTP + A T R Q+P TR R W AP G G
Sbjct: 414 PPAAAPARRRIPRTPALCTPLALPAPTTRRRQSPWTRFQWR---RRAWAAPLWPPRGAGA 470
Query: 496 DVP 488
D P
Sbjct: 471 DSP 473
>U07802-1|AAA91778.1| 482|Homo sapiens Tis11d protein.
Length = 482
Score = 31.5 bits (68), Expect = 3.9
Identities = 26/85 (30%), Positives = 31/85 (36%)
Frame = -2
Query: 697 YQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACSRPWTAP*A 518
+QP E P R PP P S S+ + C + + S SA S P AP
Sbjct: 268 HQPPGGLESPLLLDSPTSRTPP------PPSCSSASSCSSSASSCSSASAASTPSGAP-- 319
Query: 517 TCCGHGEDVPAPTDVAERHEQLLLP 443
TCC A E LL P
Sbjct: 320 TCCASAAAAAALLYGTGGAEDLLAP 344
>D21090-1|BAA04652.1| 409|Homo sapiens XP-C repair complementing
protein (p58/HHR23B) protein.
Length = 409
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/97 (26%), Positives = 38/97 (39%)
Frame = -2
Query: 721 EGNFALFMYQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACS 542
E NF + M P PA TQ+ P + T + +T A+ TP + TS
Sbjct: 66 EKNFVVVMVTKPKAVSTPAPAT-TQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTST-- 122
Query: 541 RPWTAP*ATCCGHGEDVPAPTDVAERHEQLLLPHSRP 431
P + A+ E PAP A++ + P P
Sbjct: 123 -PASITPASATASSE--PAPASAAKQEKPAEKPAETP 156
>BC020973-1|AAH20973.1| 409|Homo sapiens RAD23B protein protein.
Length = 409
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/97 (26%), Positives = 38/97 (39%)
Frame = -2
Query: 721 EGNFALFMYQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACS 542
E NF + M P PA TQ+ P + T + +T A+ TP + TS
Sbjct: 66 EKNFVVVMVTKPKAVSTPAPAT-TQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTST-- 122
Query: 541 RPWTAP*ATCCGHGEDVPAPTDVAERHEQLLLPHSRP 431
P + A+ E PAP A++ + P P
Sbjct: 123 -PASITPASATASSE--PAPASAAKQEKPAEKPAETP 156
>AY165178-1|AAN47194.1| 409|Homo sapiens RAD23 homolog B (S.
cerevisiae) protein.
Length = 409
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/97 (26%), Positives = 38/97 (39%)
Frame = -2
Query: 721 EGNFALFMYQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACS 542
E NF + M P PA TQ+ P + T + +T A+ TP + TS
Sbjct: 66 EKNFVVVMVTKPKAVSTPAPAT-TQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTST-- 122
Query: 541 RPWTAP*ATCCGHGEDVPAPTDVAERHEQLLLPHSRP 431
P + A+ E PAP A++ + P P
Sbjct: 123 -PASITPASATASSE--PAPASAAKQEKPAEKPAETP 156
>AL137852-2|CAD13275.1| 409|Homo sapiens RAD23 homolog B (S.
cerevisiae) protein.
Length = 409
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/97 (26%), Positives = 38/97 (39%)
Frame = -2
Query: 721 EGNFALFMYQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACS 542
E NF + M P PA TQ+ P + T + +T A+ TP + TS
Sbjct: 66 EKNFVVVMVTKPKAVSTPAPAT-TQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTST-- 122
Query: 541 RPWTAP*ATCCGHGEDVPAPTDVAERHEQLLLPHSRP 431
P + A+ E PAP A++ + P P
Sbjct: 123 -PASITPASATASSE--PAPASAAKQEKPAEKPAETP 156
>AK223479-1|BAD97199.1| 409|Homo sapiens UV excision repair protein
RAD23 homolog B variant protein.
Length = 409
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/97 (26%), Positives = 38/97 (39%)
Frame = -2
Query: 721 EGNFALFMYQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACS 542
E NF + M P PA TQ+ P + T + +T A+ TP + TS
Sbjct: 66 EKNFVVVMVTKPKAVSTPAPAT-TQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTST-- 122
Query: 541 RPWTAP*ATCCGHGEDVPAPTDVAERHEQLLLPHSRP 431
P + A+ E PAP A++ + P P
Sbjct: 123 -PASITPASATASSE--PAPASAAKQEKPAEKPAETP 156
>BC005010-1|AAH05010.1| 497|Homo sapiens ZFP36L2 protein protein.
Length = 497
Score = 30.7 bits (66), Expect = 6.7
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = -2
Query: 697 YQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACSRPWTAP*A 518
+QP E P R PP P S S+ + C + + S SA S P AP
Sbjct: 268 HQPPGGLESPLLLDSPTSRTPP------PPSCSSASSCSSSASSCSSASAASTPSGAP-- 319
Query: 517 TCC 509
TCC
Sbjct: 320 TCC 322
>AC010883-1|AAY14992.1| 494|Homo sapiens unknown protein.
Length = 494
Score = 30.7 bits (66), Expect = 6.7
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = -2
Query: 697 YQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACSRPWTAP*A 518
+QP E P R PP P S S+ + C + + S SA S P AP
Sbjct: 268 HQPPGGLESPLLLDSPTSRTPP------PPSCSSASSCSSSASSCSSASAASTPSGAP-- 319
Query: 517 TCC 509
TCC
Sbjct: 320 TCC 322
>BC074982-1|AAH74982.1| 159|Homo sapiens keratin associated protein
9-8 protein.
Length = 159
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 619 CTPCSASTCAR--CQTPTTRTSDTSA-CSRPWTAP*ATCC 509
C+PC TC R C PTT T+ +S C +P + ++CC
Sbjct: 5 CSPCCQPTCCRTTCWKPTTVTTCSSTPCCQP-SCCVSSCC 43
>BC074981-1|AAH74981.1| 159|Homo sapiens keratin associated protein
9-8 protein.
Length = 159
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 619 CTPCSASTCAR--CQTPTTRTSDTSA-CSRPWTAP*ATCC 509
C+PC TC R C PTT T+ +S C +P + ++CC
Sbjct: 5 CSPCCQPTCCRTTCWKPTTVTTCSSTPCCQP-SCCVSSCC 43
>BC074919-1|AAH74919.1| 159|Homo sapiens keratin associated protein
9-3 protein.
Length = 159
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 619 CTPCSASTCAR--CQTPTTRTSDTSA-CSRPWTAP*ATCC 509
C+PC TC R C PTT T+ +S C +P + ++CC
Sbjct: 5 CSPCCQPTCCRTTCWQPTTVTTCSSTPCCQP-SCCVSSCC 43
>BC074918-1|AAH74918.1| 159|Homo sapiens keratin associated protein
9-3 protein.
Length = 159
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 619 CTPCSASTCAR--CQTPTTRTSDTSA-CSRPWTAP*ATCC 509
C+PC TC R C PTT T+ +S C +P + ++CC
Sbjct: 5 CSPCCQPTCCRTTCWQPTTVTTCSSTPCCQP-SCCVSSCC 43
>AL135842-3|CAI23350.1| 118|Homo sapiens late cornified envelope 5A
protein.
Length = 118
Score = 30.3 bits (65), Expect = 8.9
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 652 TQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACSRPWTAP*ATCCG 506
+Q++ P P +CTP C P CS P P ++CCG
Sbjct: 6 SQQQCQP-PPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCG 53
>AJ406950-1|CAC27589.1| 159|Homo sapiens keratin associated protein
9.8 protein.
Length = 159
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 619 CTPCSASTCAR--CQTPTTRTSDTSA-CSRPWTAP*ATCC 509
C+PC TC R C PTT T+ +S C +P + ++CC
Sbjct: 5 CSPCCQPTCCRTTCWKPTTVTTCSSTPCCQP-SCCVSSCC 43
>AJ406947-1|CAC27586.1| 159|Homo sapiens keratin associated protein
9.3 protein.
Length = 159
Score = 30.3 bits (65), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 619 CTPCSASTCAR--CQTPTTRTSDTSA-CSRPWTAP*ATCC 509
C+PC TC R C PTT T+ +S C +P + ++CC
Sbjct: 5 CSPCCQPTCCRTTCWQPTTVTTCSSTPCCQP-SCCVSSCC 43
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,414,495
Number of Sequences: 237096
Number of extensions: 2135677
Number of successful extensions: 4833
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4824
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -