Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0292.Seq
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.65 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 741 NRDSYYPHELHIVYLAAVLKVPGXPA 818
           +RD  +P EL  V L +  ++ G PA
Sbjct: 424 SRDELHPRELEAVNLGSACRIHGSPA 449


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 224 LKMRGQSVYLDKSDIISSTFVP 289
           L+++GQ +Y+ +SD+++    P
Sbjct: 294 LRLKGQMLYIPESDLVTFLCYP 315


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 224 LKMRGQSVYLDKSDIISSTFVP 289
           L+++GQ +Y+ +SD+++    P
Sbjct: 294 LRLKGQMLYIPESDLVTFLCYP 315


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 664 PAXXTQERLPPWPSRCTPCSASTCARC-QTPTTRTSDTSACS 542
           P    +E  PP  +   P    TC  C   P T T+ T+ C+
Sbjct: 404 PVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTT-TNGCT 444


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 664 PAXXTQERLPPWPSRCTPCSASTCARC-QTPTTRTSDTSACS 542
           P    +E  PP  +   P    TC  C   P T T+ T+ C+
Sbjct: 424 PVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTT-TNGCT 464


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 664 PAXXTQERLPPWPSRCTPCSASTCARC-QTPTTRTSDTSACS 542
           P    +E  PP  +   P    TC  C   P T T+ T+ C+
Sbjct: 373 PVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHTT-TNGCT 413


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 480 VGAGTSSP*PQHVAYGAVQGREHA 551
           VG+ +++  PQHV YG  Q ++ A
Sbjct: 96  VGSPSAALQPQHVVYGNPQQQQLA 119


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = +2

Query: 218 KKLKMRGQSVYLDKSDIISSTFVPIFFAMSCWXARGM 328
           + L+++GQ +Y+D   ++     P+   ++   A G+
Sbjct: 302 RTLRLKGQMIYMDNWKMMMYLGTPVMPDLNALIATGL 338


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 606 EHGVHLLGQGGSRSCVXXAGLG 671
           +HG  + G GG RS     G+G
Sbjct: 99  DHGSGMDGMGGYRSASPSPGMG 120


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 224 LKMRGQSVYLDKSDIISSTFVPIFFAMSCWXARGM 328
           L+M+GQ V+  +SD I     P    +     RG+
Sbjct: 374 LEMKGQMVHCPESDSILFVSSPFLNGLEGLTGRGL 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,692
Number of Sequences: 438
Number of extensions: 3843
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)