Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0292.Seq
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51660.1 68418.m06405 cleavage and polyadenylation specificit...    50   1e-06
At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putativ...    33   0.23 
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    31   1.2  
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein...    28   6.6  
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                28   8.7  
At5g52510.1 68418.m06514 scarecrow-like transcription factor 8 (...    28   8.7  

>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
            factor (CPSF) A subunit C-terminal domain-containing
            protein similar to SP|Q9EPU4 Cleavage and polyadenylation
            specificity factor, 160 kDa subunit (CPSF 160 kDa
            subunit) {Mus musculus}; contains Pfam profile PF03178:
            CPSF A subunit region
          Length = 1442

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/86 (33%), Positives = 46/86 (53%)
 Frame = -3

Query: 513  AAVTEKMYRRLLMLQNVMNNYYCHIAGLNPRAFRTYKASXXXXXXXXXXGVLDGDLVALY 334
            A + E  +RRL  LQ  + +   H+AGLNP AFR +++S           ++D +L+  Y
Sbjct: 1348 APLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQFRSS-GKARRSGPDSIVDCELLCHY 1406

Query: 333  AAMPRAXQHDIAKKIGTKVEEIMSDL 256
              +P   Q ++A +IGT    I+ DL
Sbjct: 1407 EMLPLEEQLELAHQIGTTRYSILKDL 1432


>At4g05420.1 68417.m00824 UV-damaged DNA-binding protein, putative
            similar to UV-damaged DNA binding protein (GI:12082087)
            [Oryza sativa]; contains Pfam PF03178 : CPSF A subunit
            region
          Length = 1088

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = -3

Query: 513  AAVTEKMYRRLLMLQNVMNNYYCHIAGLNPRAFRTYKASXXXXXXXXXXGVLDGDLVALY 334
            A++ ++ Y  L  LQ+ +      + GL+   +R++               LDGDL+  +
Sbjct: 999  ASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNF---LDGDLIESF 1055

Query: 333  AAMPRAXQHDIAKKIGTKVEEI 268
              + R    DI+K +  +VEE+
Sbjct: 1056 LDLSRNKMEDISKSMNVQVEEL 1077


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
            similar to UV-damaged DNA binding protein (GI:12082087)
            [Oryza sativa] and damage-specific DNA binding protein 1,
            Homo sapiens, PIR2:I38908; contains Pfam PF03178 : CPSF A
            subunit region
          Length = 1088

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = -3

Query: 513  AAVTEKMYRRLLMLQNVMNNYYCHIAGLNPRAFRTYKASXXXXXXXXXXGVLDGDLVALY 334
            A++ ++ Y  L  LQ  +      + GL+   +R++               LDGDL+  +
Sbjct: 999  ASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGY---LDGDLIESF 1055

Query: 333  AAMPRAXQHDIAKKIGTKVEEI 268
              + R    +I+K +  +VEE+
Sbjct: 1056 LDLSRGKMEEISKGMDVQVEEL 1077


>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 254

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 630 QGGSRSCVXXAGLGSSXLACGWYMNSAKFPSGFR*PGNRDSYYPHELH 773
           Q  + SC     LG + LACG + + +  PS F     R+ ++ H+ H
Sbjct: 73  QSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCF--ICGREGHFEHQCH 118


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/80 (27%), Positives = 30/80 (37%)
 Frame = -2

Query: 721 EGNFALFMYQPQARXELPRPAXXTQERLPPWPSRCTPCSASTCARCQTPTTRTSDTSACS 542
           E  F + ++      + P P+  T    PP     TP  A+T A   TP    S     S
Sbjct: 7   EAFFIVALFTTSCLAQAPAPSPTTTVTPPPV---ATPPPAATPAPTTTPPPAVSPAPTSS 63

Query: 541 RPWTAP*ATCCGHGEDVPAP 482
            P +AP  +        PAP
Sbjct: 64  PPSSAPSPSSDAPTASPPAP 83


>At5g52510.1 68418.m06514 scarecrow-like transcription factor 8
           (SCL8)
          Length = 640

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -2

Query: 634 PWPSRCTPCSASTCARCQTPTTRTSDTSACSRPWTAP*ATCCGHGEDVPAPTDVAERHEQ 455
           P P+     S S+ +   +P+T ++ TS CSR      AT    G+   A T++  R  Q
Sbjct: 235 PNPNPVLSFSPSSSSSSSSPSTASTTTSVCSRQTVMEIATAIAEGKTEIA-TEILARVSQ 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,682
Number of Sequences: 28952
Number of extensions: 275223
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)