Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0291.Seq
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0142 + 13137905-13138215,13138300-13138561,13138574-131387...    35   0.071
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997     31   0.88 
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    31   1.2  
12_02_0143 - 14354323-14354463,14354733-14354837,14355515-143558...    30   2.7  
09_02_0012 + 2965797-2966714,2966756-2967011,2967051-2967147,296...    30   2.7  

>08_02_0142 +
           13137905-13138215,13138300-13138561,13138574-13138712,
           13138922-13139011,13139561-13140090
          Length = 443

 Score = 35.1 bits (77), Expect = 0.071
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +3

Query: 333 EALSGVLSRACMLXDKLRTASQAYTKLSEVKADAQVAADMVDRTAELARDVSAK-VRQLD 509
           +AL G +S  C    + ++  +A T +S  + D         +T     D++ K V  +D
Sbjct: 84  KALRGRIS--CFQQTRDKSIPEALTSMSRDQLDTVAGGAFFLKTVRGTVDLTEKMVSNMD 141

Query: 510 WXRSRVAECQRRVHDLIDLQLCSAGVEAAIXAND 611
           W   R+  CQR +H + + ++ +A ++  +   D
Sbjct: 142 WSEERLQTCQRGMHTIKETEMPAAKLDLVMKRLD 175


>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
          Length = 387

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 411 LSEVKADAQVAADMVDRTAELARDVSAK-VRQLDWXRSRVAECQRRVHDLIDLQLCSAGV 587
           +S    DA        +T   A D+  K V  + W   R+  CQR +H + +++L +A +
Sbjct: 1   MSHDHLDAAAGGSFFSKTVREAVDLIEKMVSNMGWSEERLQTCQRGMHTVKEMELLAAKL 60

Query: 588 E 590
           +
Sbjct: 61  D 61


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
 Frame = +3

Query: 318 QSEVDEALSGVLSRACMLXDKLRTASQAYTKLSEVKADAQVAADMVDRTAELARDVSAKV 497
           Q ++++A +  L     +  +L  A +   K++E ++  +   + + +  E  ++   ++
Sbjct: 356 QKKIEDARAQDLESIATVSTELDDAKEMLQKVAEEESSLRSLVESLKQELEAVKEEHDQL 415

Query: 498 RQLDWXRSRVAECQRRVHDL-IDLQLCSAGVEAAIXANDXETGA 626
           +Q D       E +  V DL + LQ C + +EAA+ A    T A
Sbjct: 416 KQKD------TETESIVGDLHVKLQKCKSELEAAVAAESKATSA 453


>12_02_0143 -
           14354323-14354463,14354733-14354837,14355515-14355815,
           14356065-14356261,14356412-14356940,14357842-14358848
          Length = 759

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 405 TKLSEVKADAQVAADMVDRTAELARDVSAK-VRQLDWXRSRVAECQRRVHDLIDLQLCSA 581
           T +S    DA        +T   A D+  K V  + W   R+  CQR +H + + +L +A
Sbjct: 219 TPMSRHHLDAAAGGAFFYKTVRGAVDLIEKMVSSMGWSEERLQTCQRGMHTIKETELLAA 278

Query: 582 GVE 590
            ++
Sbjct: 279 KLD 281


>09_02_0012 +
           2965797-2966714,2966756-2967011,2967051-2967147,
           2967175-2967634,2967804-2968117,2968220-2968235
          Length = 686

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 405 TKLSEVKADAQVAADMVDRTAELARDVSAK-VRQLDWXRSRVAECQRRVHDLIDLQLCSA 581
           T +S    DA        +T + A ++  K V  + W   R+  CQR +H + + +L +A
Sbjct: 172 TPMSRDHLDAAAGGAFFSKTVQGAVELIEKMVSNMGWSEERLQTCQRGMHTVKETELLAA 231

Query: 582 GVE 590
            ++
Sbjct: 232 KLD 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,815
Number of Sequences: 37544
Number of extensions: 266305
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)