Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0291.Seq
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39740-4|AAO91692.1|  417|Caenorhabditis elegans C.elegans homeo...    30   2.4  
U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeo...    30   2.4  
U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeo...    30   2.4  
U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.       30   2.4  
AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical ...    28   7.3  

>U39740-4|AAO91692.1|  417|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform c protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 75  LFLPEPVLTSSLRLNP*AYLSAIVQLEYTIRLPVVSQKKR*GRRKLFIINQQIQEPSYS 251
           L  P P L  SL   P    +++   +   R PVVSQ  +  +R+LF    +I+  S S
Sbjct: 243 LIAPSPTLLQSLMNTPTQPTASLTPKKAENRPPVVSQTLKASKRRLFDDTSRIEAASMS 301


>U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform a protein.
          Length = 542

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 75  LFLPEPVLTSSLRLNP*AYLSAIVQLEYTIRLPVVSQKKR*GRRKLFIINQQIQEPSYS 251
           L  P P L  SL   P    +++   +   R PVVSQ  +  +R+LF    +I+  S S
Sbjct: 230 LIAPSPTLLQSLMNTPTQPTASLTPKKAENRPPVVSQTLKASKRRLFDDTSRIEAASMS 288


>U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform b protein.
          Length = 540

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 75  LFLPEPVLTSSLRLNP*AYLSAIVQLEYTIRLPVVSQKKR*GRRKLFIINQQIQEPSYS 251
           L  P P L  SL   P    +++   +   R PVVSQ  +  +R+LF    +I+  S S
Sbjct: 228 LIAPSPTLLQSLMNTPTQPTASLTPKKAENRPPVVSQTLKASKRRLFDDTSRIEAASMS 286


>U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.
          Length = 542

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 75  LFLPEPVLTSSLRLNP*AYLSAIVQLEYTIRLPVVSQKKR*GRRKLFIINQQIQEPSYS 251
           L  P P L  SL   P    +++   +   R PVVSQ  +  +R+LF    +I+  S S
Sbjct: 230 LIAPSPTLLQSLMNTPTQPTASLTPKKAENRPPVVSQTLKASKRRLFDDTSRIEAASMS 288


>AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical
           protein F52H2.1 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 417 EVKADAQVAADMVDRTAELARDVSAKVRQLDWXRSRV 527
           EV  DAQ   +M+++ AE+A  ++ K+R+ +   SR+
Sbjct: 394 EVFNDAQQIFEMLNQAAEIAHKMNEKIREANGDMSRM 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,526,717
Number of Sequences: 27780
Number of extensions: 223958
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)