Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0291.Seq
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containi...    54   2e-07
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr...    29   5.2  

>At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1117

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 35/103 (33%), Positives = 51/103 (49%)
 Frame = +3

Query: 318 QSEVDEALSGVLSRACMLXDKLRTASQAYTKLSEVKADAQVAADMVDRTAELARDVSAKV 497
           Q  +D  L  +LS+   L   L    ++   L  VKADA      V  T +LA  VS KV
Sbjct: 429 QRSLDSDLDTLLSQRTELDRNLVQLQRSAEILDIVKADADHMLGNVRSTCDLADQVSGKV 488

Query: 498 RQLDWXRSRVAECQRRVHDLIDLQLCSAGVEAAIXANDXETGA 626
           R+LD  +SRV     R+  +++   C  GV+ A+ + D E+ A
Sbjct: 489 RELDLAQSRVNVTLSRIDAIVERGNCIEGVKTALESEDYESAA 531


>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;annotation temporarily based on
           supporting cDNA gi|17224394|gb|AF246291.1|AF246291
          Length = 637

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +3

Query: 450 MVDRTAELARDVSAKVRQLDWXRSRVAECQRRVHDLIDLQLCSAGVEAAIXANDXETGAG 629
           ++D T E  +++  +V++L+  R       R    +   + C AG   +    + ETG G
Sbjct: 475 ILDDTIEYLQELERRVQELESCRESTDTETRGTMTMKRKKPCDAGERTSANCANNETGNG 534

Query: 630 TRVEIPKXG 656
            +V +   G
Sbjct: 535 KKVSVNNVG 543


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,133
Number of Sequences: 28952
Number of extensions: 207029
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)