Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0290.Seq
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.85 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   8.0  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 314 GCKVGTC*ASLSSFNICKSVSSLHCQ 237
           GCK G C   ++S  +C + S+L  Q
Sbjct: 139 GCKKGVCTMEINSDTMCVTFSNLGIQ 164



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 579 RHFFNLYQQTTGKGKVSRSELPGRAAGS 662
           R F  + +Q   K    R E  GR+AGS
Sbjct: 62  RAFVKIIEQPASKALRFRYECEGRSAGS 89


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
 Frame = -3

Query: 547 SILLPRISTGQ-LLASRQ*ATSLVQPWTPADVAGHTRRPGTLSRPPRGSSRATH 389
           S+   R ST     +SR   TS     T A        PG  S+PP  +S   H
Sbjct: 83  SLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQPPTDNSHVHH 136


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 261 ECFFPALSSPRNKSLPDFFHRPRNPNTPV 175
           + F    S  +NKSL  F    RN +TP+
Sbjct: 406 DTFLDLWSDYQNKSLAAFDFVARNSDTPI 434


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 621 KVSRSELPGRAAGSFSCARC 680
           K++  E+PG      +C RC
Sbjct: 499 KLTSKEVPGETINLQTCVRC 518


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 374 CPPRSNVVKRILP 336
           CPP+   +KR+LP
Sbjct: 53  CPPQGVDLKRVLP 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,656
Number of Sequences: 336
Number of extensions: 3497
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)