Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0290.Seq
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...   138   6e-34
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    64   3e-11
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    62   8e-11
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    61   1e-10
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    34   0.025
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    32   0.076
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    29   0.71 
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    29   0.94 
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   3.8  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   5.0  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   6.6  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   6.6  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   6.6  

>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score =  138 bits (335), Expect = 6e-34
 Identities = 67/101 (66%), Positives = 78/101 (77%)
 Frame = +1

Query: 202 MEKVGQALVSGT*QCREETLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQ 381
           + K  + L  G     + TLLHMLK+DRLA   PTLHPTSEEL+IG++RFTTFDLGGHQQ
Sbjct: 17  VNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQ 76

Query: 382 ARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDE 504
           ARR+WRDYFP V+ IV+LVD CD  RL ESKAELD+LL  E
Sbjct: 77  ARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAME 117



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = +3

Query: 504 DASNCPVLILGNKIDKPGAASEDELRHFFNLYQQTTGKGKVSRSELPG-RAAGSFSCARC 680
           + +  P LILGNKID PGA SEDEL+    LY QTTGKG VS+  +PG R    F C+  
Sbjct: 118 ELARVPFLILGNKIDAPGAISEDELKAALGLY-QTTGKG-VSK-PVPGIRPIEVFMCSVV 174

Query: 681 *SVRGYGEG 707
              +GYGEG
Sbjct: 175 -LRQGYGEG 182



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +2

Query: 155 MFILDWFTGVLGFLGLWKKSGKLLFLGLDNAGK 253
           MFI++WF   L  LGL  K  K+LFLGLDNAGK
Sbjct: 1   MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGK 33


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 30/94 (31%), Positives = 52/94 (55%)
 Frame = +1

Query: 223 LVSGT*QCREETLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRD 402
           L+ G     + T+L+ LK   +   +PT+    E +   ++ FT +D+GG  + R +WR 
Sbjct: 21  LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRH 80

Query: 403 YFPAVDAIVFLVDACDRPRLPESKAELDSLLTDE 504
           YF     I+F+VD+ DR R+ E+  EL  +L ++
Sbjct: 81  YFQNTQGIIFVVDSNDRERISEAHEELQRMLNED 114


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 31/100 (31%), Positives = 55/100 (55%)
 Frame = +1

Query: 205 EKVGQALVSGT*QCREETLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQA 384
           E+  + L+ G     + T+L  L ++ + +  PT       L +  +RFT +D+GG +  
Sbjct: 14  EREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTL 73

Query: 385 RRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDE 504
           R  W++YF + +AI+++VD+ D  RL E +  L  LL +E
Sbjct: 74  RNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEE 113


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 27/93 (29%), Positives = 54/93 (58%)
 Frame = +1

Query: 223 LVSGT*QCREETLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRD 402
           L+ G     + T+L+ LK ++    +PT+    E ++  +++F  +D+GG  + R +WR 
Sbjct: 25  LMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRH 84

Query: 403 YFPAVDAIVFLVDACDRPRLPESKAELDSLLTD 501
           YF     ++F+VD+ D  R+ E++ EL  +++D
Sbjct: 85  YFTGTKGLIFVVDSADSNRISEARQELHRIISD 117


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 277 DDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLVDACD 450
           DD L     TL  +    ++  ++   FD+GG +  RR W   F  V++I+F V   D
Sbjct: 170 DDILRSRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLND 227


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 280 DRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLV 438
           D L   + T   + E   +    +  FD+GG +  RR W   F  V A++FLV
Sbjct: 213 DILHCRIKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 72  ILQISAKTRDTLPLGLVINIVQFNYIQKCLSSTGSLECWDFLVYGKSRASSCFW 233
           IL+ ++ TR+ L      + ++   I++ L + GSL   D L+ G S A   FW
Sbjct: 633 ILRDASLTRNPLVYPSAKSSIKSIDIKRVLENVGSLNHEDILLIGSSNAKYSFW 686


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 370 GHQQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAEL 483
           G  ++RRVW+++  A+DA  +   + ++ ++ E + EL
Sbjct: 306 GEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQREL 343


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = -1

Query: 651 PDREARTLILFPFQW-----SADTD*KSDVVRLHWQHRVYQSCCRESAQGSYW 508
           PD  +R L   P +        DT+  S V R  W H+V + C    +   YW
Sbjct: 498 PDEPSRVLFSNPSEMIRAFARIDTNDLSSVRRFFWIHKVLRGCLLLISSDIYW 550


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 75  LQISAKTRDTLPLGLVINIVQFNYIQKCLSSTGSLECWDFLV 200
           LQI    +D   LG+  NIV + +I +    TG+    +++V
Sbjct: 113 LQIKLILQDADRLGIQFNIVDYTHILRVAMYTGNKHILEYIV 154


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 63  QRNILQISAKTRDTLPLGLVINIVQFNYI 149
           Q N++++  K  DT+PL + +NI++  ++
Sbjct: 338 QGNVVELRLKYFDTVPLAVQLNILKTGFL 366


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 255 FFPALSSPRNKSLPDFFHRPRNPNTPVN 172
           ++PAL++P   S+ D  + P  P +P+N
Sbjct: 259 YWPALAAPVYPSMKDVPNNPFTPFSPIN 286


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 246 ALSSPRNKSLPDFFHRPRNPNTPVNQS 166
           A  S  N  LP F   P + ++PVNQS
Sbjct: 73  AEESDPNLKLPSFLAPPNDKDSPVNQS 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,207
Number of Sequences: 5004
Number of extensions: 59400
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)