Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0289.Seq
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    27   2.2  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   2.9  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   3.9  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   3.9  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   5.1  

>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 528 WDYVLQLPLHSSVTACSTIVGEQVAAVSRPALHYRTPYAHPVN*LAARGLADPAALVLRI 707
           W +V    L+SSV   ST+    V   +R   H +TPY   +       ++ P  +V  +
Sbjct: 263 WSWVFMCALNSSVAGFSTL-AVNVNDFTRYVKHPKTPYVQMLILPLVAAVSAPIGIVSGV 321

Query: 708 LTKSKEG 728
            +K   G
Sbjct: 322 ASKIMYG 328


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 342 PARHTSHDSVTLI*CHN-GSHL 404
           PA HT HDS TL   HN G+H+
Sbjct: 157 PAEHTRHDSKTLGLNHNQGAHI 178


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 353 YVTRFSDFDLMSQ-W*PPRNTTVLEKKVGRWKQRR---XEGGSKKKDENENQLKRTK 511
           Y  +++ +D     W P +N    EK + +WK+R+    +G  +  D  +N+ K+ K
Sbjct: 40  YYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMK 96


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 666 ARGLADPAALVLRILTKSKEGK 731
           A G+A  A LVLR L +SK+GK
Sbjct: 727 ATGIALTATLVLRNLVRSKQGK 748


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 762 PETSSPDPDETSLPWILLKCARPVPQGQPGP 670
           PE      D+T    I ++C  PV  G PGP
Sbjct: 141 PEVIDSLGDKTKARAIAIRCGVPVVPGTPGP 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,964
Number of Sequences: 5004
Number of extensions: 62546
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)