Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0289.Seq
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0505 + 25719959-25720052,25721548-25722266 31 1.0
11_01_0568 - 4486870-4487084,4487510-4487941,4488264-4488267 29 4.0
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 29 4.0
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 28 7.1
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307... 28 7.1
04_03_0572 + 17310729-17310746,17312209-17312902,17312991-173134... 28 7.1
03_02_0091 + 5574528-5577254 28 7.1
11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239 28 9.3
05_04_0293 - 19898254-19898819,19899698-19899701 28 9.3
>04_04_0505 + 25719959-25720052,25721548-25722266
Length = 270
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/76 (32%), Positives = 31/76 (40%)
Frame = +3
Query: 189 PLQCLPRSAFKRNGLQDCQFFQKVRFATCAVPALVLNRVHRPVRRVCDAPRPARHTSHDS 368
P Q PR +G + + R A A P R+ RR D PRPAR H +
Sbjct: 51 PNQRAPRRLIGDHGRKPLTLHEGRREAF-ATPPKSYGRLLGRRRRHRDLPRPARGVDHPA 109
Query: 369 VTLI*CHNGSHLATLR 416
VTL H S +R
Sbjct: 110 VTLRGLHPSSETGDIR 125
>11_01_0568 - 4486870-4487084,4487510-4487941,4488264-4488267
Length = 216
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 479 DENENQLKRTK-AVNCEVGLCITAATAFKRNGLQHDCRRTGCSGEPTCLALPDPLCAP 649
DE+E ++ A+N E C++A +G+ H T CS L D C+P
Sbjct: 142 DEDEGRIGSVHDAMNAEAEACLSALRITSLHGISHFAIETDCSALVGALTSCDFDCSP 199
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 762 PETSSPDPDETSLPWILLKCARPVPQGQPGPWP 664
P P D SL L+ C++PV +GQP P P
Sbjct: 49 PGAHDPADDHKSL---LIPCSQPVAEGQPQPTP 78
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 762 PETSSPDPDETSLPWILLKCARPVPQGQPGPWPRA 658
P + P P +T+ P ++ P PQ QP P P A
Sbjct: 49 PSSKPPPPTQTAPPVPVVISEPPPPQPQPEPQPAA 83
>12_02_0280 -
16729000-16729678,16729948-16730039,16730072-16730772,
16731033-16731144,16731961-16731970,16732954-16733663
Length = 767
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 89 NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSK 256
N +SL+ L HV S +PY I RLR+SAP + +A W+ + K
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRK 595
>04_03_0572 +
17310729-17310746,17312209-17312902,17312991-17313400,
17325755-17326063
Length = 476
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 756 TSSPDPDETSLPWILLKCARPVPQGQPGPWPRAN*LGAHKGSGNARQ-VGSPLQ 598
T SP ++T LPW +P+ P P P + L G G R+ VG PL+
Sbjct: 365 TPSPSHNKTGLPWTSYCRNQPLRLLSPPPHP-SRPLQPDLGEGGKRKGVGKPLR 417
>03_02_0091 + 5574528-5577254
Length = 908
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 121 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFKR 258
+ L V AALW ++ A R VC G +S K FF+R
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFER 526
>11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239
Length = 126
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +2
Query: 587 RRTGCSGEPTCLALPDPLCAPSQLARGQGPG*PCGTGLA 703
RR GCSG A P + ARGQ PG C T A
Sbjct: 18 RRAGCSGGVGRRAGGGVARRPRRPARGQRPGDACATEAA 56
>05_04_0293 - 19898254-19898819,19899698-19899701
Length = 189
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 106 PPFACILLQSCVLHAAL 156
PP AC +LQ C LH+ L
Sbjct: 82 PPLACAILQECELHSYL 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,692,176
Number of Sequences: 37544
Number of extensions: 516305
Number of successful extensions: 1267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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