Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0289.Seq
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09)                 32   0.58 
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      28   9.5  
SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09)
          Length = 539

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 401 PRNTTVLEKKVGRWKQRRXEGG--SKKKDENENQLKRTKAVNCEVGLCITAATAFKRNGL 574
           P ++  L     RWKQRR            N+ ++++TK++  E    IT+  +   NG+
Sbjct: 26  PEDSLSLRGSFARWKQRRQSRSITDPNSYRNKREIRKTKSLGSE----ITSQASLATNGI 81

Query: 575 QHDCRRTGCSGE 610
             + +   CS E
Sbjct: 82  FKEAKVETCSQE 93


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 122 FYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSK 256
           FYY+H+ S      L++  +    P+FA +  + +++ +LP F K
Sbjct: 103 FYYDHLMSRDGSKPLRVRSMVGLVPLFACLVLEDEFVQKLPGFKK 147


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 500 KRTKAVNCEVGLCITAATAFKRNGLQHDCRRTGCSGE-PTC 619
           KR K V C +     A     R   +H C+R  C G+ P C
Sbjct: 261 KREKNVQCSMEFTCEAKCTNMRQCSRHQCKRKCCDGKCPPC 301


>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 699 RPVPQGQPGPWPRAN*LGAHKGSGNARQVGSPLQ 598
           RP P+  P   PR++   +  GS  +  VGSP Q
Sbjct: 341 RPSPKNSPRTSPRSSPFASPTGSPTSSPVGSPAQ 374


>SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 407 NTTVLEKKVGRWKQRRXEGGSKKKDENENQLK 502
           N  V+EKK  RW + + +G S  + E + Q++
Sbjct: 813 NNVVVEKKRMRWTRSKEDGNSTAEIEKKKQMR 844


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,954,090
Number of Sequences: 59808
Number of extensions: 548902
Number of successful extensions: 1844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)