Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0289.Seq
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76840.1 68414.m08942 hypothetical protein                          30   1.9  
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp...    30   1.9  
At2g17705.1 68415.m02051 expressed protein                             29   4.5  
At5g47230.1 68418.m05824 ethylene-responsive element-binding fac...    28   5.9  
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    28   7.8  
At5g06050.1 68418.m00670 dehydration-responsive protein-related ...    28   7.8  

>At1g76840.1 68414.m08942 hypothetical protein
          Length = 176

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 401 PRNTTVLEKKVGRWKQRRXEGGSKKKDENENQLKRTKAVNCEVGLCI 541
           PR+ T+LE  V  WK+      +K  D  E +++ TK     VG C+
Sbjct: 86  PRSETILENSVECWKEIH---SNKDDDVKEERMEITKVGCASVGHCL 129


>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / ubiquitin family protein
           similar to SP|Q15459 Splicing factor 3 subunit 1
           (Spliceosome associated protein 114) {Homo sapiens};
           contains Pfam profiles PF00240: Ubiquitin family,
           PF01805: Surp module
          Length = 785

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 410 TTVLEKKVGRWKQRRXEGGSKKKDENENQLKRTK 511
           TTVLE+ + R +  R +   KKK+E+E +L+R +
Sbjct: 264 TTVLERCLHRLEWDRSQEQQKKKEEDEKELERVQ 297


>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 126 TTIMCTPCGPMVCYKYEDCGPPL 194
           T I CT C  ++ Y Y+D GPPL
Sbjct: 72  TKIKCTSCNHLIGYIYDD-GPPL 93


>At5g47230.1 68418.m05824 ethylene-responsive element-binding factor
           5 (ERF5) identical to SP|O80341 Ethylene responsive
           element binding factor 5 (AtERF5) [Arabidopsis thaliana]
          Length = 300

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 428 KVGRWKQRRXEGGSK-KKDENENQLKRTKAVNCEVGLCITAATAF 559
           +VG+WK R  EG  K K+D++E      K +  E  + +     F
Sbjct: 215 EVGKWKPRADEGEKKRKRDDDEKVTVVEKVLKTEQSVDVNGGETF 259


>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 423 KKKSADGNSGGRRVAPKKRMKTKIS 497
           K+  ADG SG +RV P+KR K + S
Sbjct: 840 KRLEADGLSGNQRVLPEKREKREDS 864


>At5g06050.1 68418.m00670 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410;  contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 682

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -1

Query: 711 LKCARPVPQG--QPGPWPRA 658
           L C  P+PQG   P PWPR+
Sbjct: 192 LNCTVPIPQGYRSPIPWPRS 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,099
Number of Sequences: 28952
Number of extensions: 367324
Number of successful extensions: 950
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)