Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0288.Seq
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 151 1e-37
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 104 2e-23
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 101 9e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 80 4e-16
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.0
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 9.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 151 bits (365), Expect = 1e-37
Identities = 69/94 (73%), Positives = 78/94 (82%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDKFXFGQSGAGNNWAKGHYTEGAELVDXVLDVVRKEA 433
LVDLEPGTMD+V+SG FG +FRPD +GQSGAGN WAKGHYTEGAEL D VLDVVR+EA
Sbjct: 65 LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREA 124
Query: 434 ESCDCLQGFQLTHSLXGGTGSRYGHLLIFQNSEK 535
E+CD LQGFQLTHSL GGTGS G LL+ + E+
Sbjct: 125 EACDALQGFQLTHSLGGGTGSGMGTLLLSKIREE 158
Score = 113 bits (273), Expect = 2e-26
Identities = 47/64 (73%), Positives = 55/64 (85%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 242
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 243 PRAI 254
PRA+
Sbjct: 61 PRAV 64
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +1
Query: 517 LPKFREEYPDRIMNTYSVVPSPKVSDTVVEPYNAT 621
L K REEYPDR+M T+SV P+PK SDTVVEPYNAT
Sbjct: 152 LSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNAT 186
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 104 bits (249), Expect = 2e-23
Identities = 47/92 (51%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Frame = +2
Query: 245 PRHL-VDLEPGTMDSVRSGPFGQIFRPDKFXFGQSGAGNNWAKGHYTEGAELVDXVLDVV 421
PR + VDLEP +D VR+GP+ +F P++ G+ A NN+A+GHYT G ELVD V D +
Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKI 122
Query: 422 RKEAESCDCLQGFQLTHSLXGGTGSRYGHLLI 517
R+ A++C LQGF + HS GGTGS +G LL+
Sbjct: 123 RRIADNCSGLQGFLVFHSFGGGTGSGFGALLL 154
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 236
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 237 YVPRAI 254
YVPR+I
Sbjct: 61 YVPRSI 66
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 517 LPKFREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 618
L + EY + +SV P+P+VS +VVEPYN+
Sbjct: 154 LERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNS 187
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 101 bits (243), Expect = 9e-23
Identities = 45/92 (48%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Frame = +2
Query: 245 PRHL-VDLEPGTMDSVRSGPFGQIFRPDKFXFGQSGAGNNWAKGHYTEGAELVDXVLDVV 421
PR + VDLEP +D VR+GP+ +F P++ G+ A NN+A+GHYT G E++D VL+ +
Sbjct: 67 PRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERI 126
Query: 422 RKEAESCDCLQGFQLTHSLXGGTGSRYGHLLI 517
R+ A++C LQGF + HS GGTGS G LL+
Sbjct: 127 RRMADNCSGLQGFLVFHSFGGGTGSGLGALLL 158
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = +3
Query: 63 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 224
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 225 SGGKYVPRAI 254
GK+VPR+I
Sbjct: 61 GQGKFVPRSI 70
Score = 33.9 bits (74), Expect = 0.026
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 517 LPKFREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 618
L + EY + +SV P+P+VS +VVEPYN+
Sbjct: 158 LERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNS 191
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 79.8 bits (188), Expect = 4e-16
Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = +2
Query: 254 LVDLEPGTMDSVRSGPFGQIFRPDKFXFGQSG--AGNNWAKGHYTEGAELVDXVLDVVRK 427
L+DLEP ++++ S +G ++ P+ ++G AGNNWA G Y+ + + ++D++ +
Sbjct: 66 LIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDR 124
Query: 428 EAESCDCLQGFQLTHSLXGGTGSRYGHLLI 517
EA+ D L+GF L HS+ GGTGS G L+
Sbjct: 125 EADGSDSLEGFSLLHSIAGGTGSGLGSFLL 154
Score = 68.1 bits (159), Expect = 1e-12
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +3
Query: 66 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 245
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 246 RAI 254
RAI
Sbjct: 63 RAI 65
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 517 LPKFREEYPDRIMNTYSVVP-SPKVSDTVVEPYNA 618
L + + YP +I+ TYSV P S VSD VV+PYN+
Sbjct: 154 LERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNS 188
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 102 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 203
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 365 AKGHYTEGAELVDXVLDVVRKEAESCDCLQ 454
A+GH G ELV D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 230 RQVRAPRHLVDLEPGTMDSVRSGPFGQIFRPDKFXFGQSGAGN 358
R+V AP+H GT RS +FR + FGQ GN
Sbjct: 486 REVFAPKH-ARRRLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,914
Number of Sequences: 5004
Number of extensions: 61447
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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