Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0287.Seq
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    28   1.3  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    27   4.1  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   4.1  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   7.1  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    26   7.1  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   7.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   7.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.1  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   9.4  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1018

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
 Frame = +1

Query: 253  TKANSNLIRVTNNIVPIKPKSVP--APAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIM 426
            T ANS+ IR   + +  KP+S P   P+   M   +P +  +EK   +   +  SN N  
Sbjct: 657  TSANSSNIRDMEHTISDKPRSEPDAIPSSKSMHSNKPFEEKSEKPTTKRLVTNPSNVNAS 716

Query: 427  QMNNIPFSTSLTAPGREQYAGVGASTAHIHRS--TRESLPTSAEFRHPXQHQCCQTFQHS 600
              +N+          ++     GA++ H+ +S  TR +   +  F +         F  +
Sbjct: 717  WHSNM-LKRQEDLRKKKPLTDNGATSRHMLKSGLTRVTSKPTQRFANELAEDMSLAFHST 775

Query: 601  XP 606
             P
Sbjct: 776  IP 777


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 469 QVQSNLLRKGYCSSA*YWDLISLRSELACVFFRHSVDEAPKS-ASCSQLVQ 320
           Q  ++ L    CS +  W  +SL S   CV+     D A K+    S +VQ
Sbjct: 234 QANNSELSSSICSISANWSTLSLLSTEGCVYAFGRCDRAQKAHTKASDIVQ 284


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 506 PIFTGVQESPFRLQLNSDTP 565
           P+F GVQ++PF  + ++D P
Sbjct: 412 PMFRGVQQNPFAKEFHNDGP 431


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +1

Query: 262 NSNLIRVTNNIVPIKPKSVPAPAGNKMPI-WEPRQPNAEKTHMQAQTSAISNP---NIMQ 429
           +SN    TN+I+   P    +PA + +PI      P +EK   Q  T ++++       Q
Sbjct: 146 SSNSSSDTNSILYAGPTFTHSPAASNLPIPTFLHSPVSEKAEWQPPTGSVNSNMPFQFHQ 205

Query: 430 MNNIPFSTSLTAPG 471
            +++P + S  A G
Sbjct: 206 SSSVPSTPSEVAMG 219


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +1

Query: 367 NAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPGREQYAGVGASTAHIHRSTRE----- 531
           ++E     A  +  S+PN  ++N +       AP RE YAG  A    +  S        
Sbjct: 269 DSEHARSVASETCSSDPNNPKLN-LKAPVFSEAPIRE-YAGHTADILDLSWSRNNFLLSS 326

Query: 532 SLPTSAEFRHPXQHQCCQTFQHS 600
           S+  +A   HP +  C   F+HS
Sbjct: 327 SMDKTARLWHPVRKDCLCCFEHS 349


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 451 TSLTAPGREQYAGVGASTAHIHRSTRESLPTSAEFRH 561
           T++     +    +GAS AH+H    E +    E +H
Sbjct: 175 TTIAKAAIDNLVSIGASLAHVHVPGHEPIAKEDEMKH 211


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 355 PRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTA 465
           PR+   E T   + +S I++P  +Q +  PF  S+ A
Sbjct: 670 PRKNTEESTSSSSFSSLITSPASLQYDENPFKQSVVA 706


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 298 PIKPKSVPAPAGN--KMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAP 468
           P  P+S PA + N   +P W+  QP         Q SA+   N++   N PF    +AP
Sbjct: 444 PAAPQSAPALSMNPSSLPPWQ--QPT--------QQSAVQPSNLVPSQNAPFIPGTSAP 492


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +1

Query: 241  SNEKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPN 420
            S+   K  S+ I +T +   I+   +P P+    P      P +     +A TS   NPN
Sbjct: 3769 SSSLGKIGSSSISLTLSSSSIRDAELPTPSRMTSPSLSETIPQSSSIS-EASTS---NPN 3824

Query: 421  IMQMNNIPFSTSLT 462
            I+    + F +++T
Sbjct: 3825 ILSSTVLSFDSTIT 3838


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 520 STRESLPTSAEFRHPXQHQCCQTF 591
           +T  SLP +  +++P +H C  +F
Sbjct: 70  NTSSSLPCTDSYQYPLKHSCTPSF 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,680
Number of Sequences: 5004
Number of extensions: 60160
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)