Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0287.Seq
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 31 1.0
06_02_0329 - 14483954-14483984,14490155-14490843 30 2.4
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 29 3.2
03_06_0063 - 31391870-31392679 29 5.6
07_03_1603 + 28080561-28080706,28080752-28080834,28082055-280820... 28 7.4
06_03_0986 - 26574083-26574952 28 7.4
11_08_0062 + 28122857-28123771 28 9.8
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 28 9.8
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 235 FHSNEKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISN 414
F SNE ++ + + P PKS+P P MP P+ P+ E + + + S ++
Sbjct: 566 FPSNEMSRNEDRCADLNKPMAP--PKSMPPPPPKSMPPPPPKFPSNEMSRNEDRRSDLNK 623
Query: 415 P 417
P
Sbjct: 624 P 624
>06_02_0329 - 14483954-14483984,14490155-14490843
Length = 239
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 595 VGKFGNIGVVWGVGIQLKSEGTLLYSCEYGL 503
VGK G + V WG + K EGTL +C+ GL
Sbjct: 29 VGKTGQVTVFWG---RNKDEGTLREACDSGL 56
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 29.5 bits (63), Expect = 3.2
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Frame = +1
Query: 298 PIKPKSVPAPAGNKMPIWEPR---QPNAEKTHMQAQTSA--ISNP---NIMQMNNIPFST 453
P +PK+ P PA K+ EP +P A KT +Q S+P + + NN+P S+
Sbjct: 1720 PSEPKAQPEPAEPKVKETEPSRTPEPKAPKTEEASQPGGRIFSSPLARKLAEDNNVPLSS 1779
Query: 454 SL-TAP-GREQYAGVGASTAHIHR-STRESL 537
+ T P GR A + A + + RE+L
Sbjct: 1780 VMGTGPDGRILKADIEDYLASVAKGGKREAL 1810
>03_06_0063 - 31391870-31392679
Length = 269
Score = 28.7 bits (61), Expect = 5.6
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Frame = +1
Query: 235 FHSNEKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKT--HMQAQTSAI 408
F S + + RV P P PAP +P E R+P T T+ +
Sbjct: 106 FSSYQALGGHKTSHRVKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTAASSDGMTNRV 165
Query: 409 SNPNIMQMNNIPFSTSLTAPGREQY-AGVGASTAHIHRSTRESLPTSA 549
+I Q P +L R+ Y GVGA S+ E L T A
Sbjct: 166 HRCSICQ-KEFPTGQALGGHKRKHYDGGVGAGAG---ASSTELLATVA 209
>07_03_1603 +
28080561-28080706,28080752-28080834,28082055-28082092,
28083639-28084051,28084390-28084458,28084868-28084871,
28086638-28086763
Length = 292
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/88 (23%), Positives = 31/88 (35%)
Frame = +1
Query: 295 VPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPGR 474
VP+ P+S+P P + R PN QT+ N + N + T++ R
Sbjct: 34 VPLSPRSIPQPLAPER-FQNVRLPNDN----DMQTAEKLNKTSIDSNRVGLLTAIVPAQR 88
Query: 475 EQYAGVGASTAHIHRSTRESLPTSAEFR 558
V H R SL F+
Sbjct: 89 RNVGAVHGDNHAFHNELRRSLVHLVSFQ 116
>06_03_0986 - 26574083-26574952
Length = 289
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +1
Query: 262 NSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNI 441
N ++++++N +VP + P P +P+ P P + + + + P +M I
Sbjct: 179 NISVLQISNFVVPPGVLTRPRPGPGPLPLPSPPLPRMKPMAIAPTPAPVPAPT--KMVPI 236
Query: 442 PFSTSLTAPGRE 477
P S LT P E
Sbjct: 237 PPSLPLTDPADE 248
>11_08_0062 + 28122857-28123771
Length = 304
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 592 GKFGNIGVVWGVGIQLKSEGTLLYSCEYGL 503
GK G + V WG + K+EGTL +C+ GL
Sbjct: 31 GKTGQMTVFWG---RNKNEGTLKETCDTGL 57
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 NSNLIRVTNNIVPIKPKSVPA-PAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNN 438
N +IR +N+ P S PA +G++ +QP H + S S+P Q
Sbjct: 51 NPGVIRAADNLA-AAPSSRPATSSGHRESQRHHQQPPGSHQHHRRSGSVASDPGDFQSKF 109
Query: 439 IPFSTSLTAPGREQYAGVGASTAHIH 516
P +P QY + H H
Sbjct: 110 APPPQFRPSPSPSQYDHHSSDHRHGH 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,747,118
Number of Sequences: 37544
Number of extensions: 371282
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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