Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0287.Seq
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)               30   2.5  
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)                 30   2.5  
SB_52668| Best HMM Match : BSD (HMM E-Value=0.033)                     29   4.3  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   5.7  
SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)                       29   5.7  
SB_5536| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             28   10.0 

>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 431

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 367 NAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPGREQYAGVGASTAHIHRSTRESLPTS 546
           N  + ++Q+ TS +    +    N+ F ++ TAP +    G  A         + S PT 
Sbjct: 232 NVYQNNLQSDTSVLDKLFLQSSGNMDFLSTPTAPSKPSQRGRPAKGGSAILKAKRSNPTD 291

Query: 547 AEFRHP 564
           +  R P
Sbjct: 292 SRSRTP 297


>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 669

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +1

Query: 367 NAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPGREQYAGVGASTAHIHRSTRESLPTS 546
           N  + ++Q+ TS +    +    N+ F ++ TAP +    G  A         + S PT 
Sbjct: 470 NVYQNNLQSDTSVLDKLFLQSSGNMDFLSTPTAPSKPSQRGRPAKGGSAILKAKRSNPTD 529

Query: 547 AEFRHP 564
           +  R P
Sbjct: 530 SRSRTP 535


>SB_52668| Best HMM Match : BSD (HMM E-Value=0.033)
          Length = 433

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
 Frame = +1

Query: 241 SNEKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTH-MQAQTSAISNP 417
           S EK K   +++ +T N  PI  +S     G+     E  QP  ++    + + SA   P
Sbjct: 206 SKEKIKVQDDVVNLTTN-EPISQESTTE--GHDTTPNETEQPTKDQQDGAEEKRSAKKLP 262

Query: 418 NIMQMNNIPFSTSLTAPGREQYAGVGASTAHIHRSTRESLPTSAEFRHPXQHQCCQTFQH 597
                   P +TS T+P  E    + A T+H   S   S PTS       +   C   +H
Sbjct: 263 -------APSATSQTSPQPESAPALNAETSH---SDEPSKPTSELKGEASEVSVCVVDEH 312

Query: 598 S 600
           S
Sbjct: 313 S 313


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 460  TAPGREQYAGVGASTAHIHRSTRESLPTSAE 552
            +APG  QY+G G+   HI + TRE  PT+ E
Sbjct: 1336 SAPG-SQYSGEGSG--HIEKETREPSPTTQE 1363


>SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)
          Length = 330

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 288 ICNSYEVRICFGFFITVKSQLSP*IFAFFKIY 193
           IC +     C GF + ++ Q  P +FA F +Y
Sbjct: 28  ICRNTRKDYCEGFHLLIRLQKPPFVFALFTVY 59


>SB_5536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 313 SVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPGRE 477
           ++ APA  +  +    Q   +   +Q   + +S+  + +++NIPFS     PG E
Sbjct: 17  ALSAPATTEEELSPAAQDETKDEPLQEDDANLSSGGVHKISNIPFSRFSNDPGEE 71


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 331  GNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPGREQYAGVGASTAH 510
            G++     PR  N     M A    +  PN  +  +   S     PG   +  VG++ +H
Sbjct: 844  GSRQGATHPRM-NWMAKDMLAADGPLLIPNRQRSLSESTSGDRFPPGTSPHGAVGSAPSH 902

Query: 511  IHRSTRESLPT 543
            +H  +  +LPT
Sbjct: 903  LHYQSPPNLPT 913


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,069,590
Number of Sequences: 59808
Number of extensions: 454393
Number of successful extensions: 1016
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)