Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0287.Seq
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical p... 31 0.71
Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z70306-1|CAA94322.1| 355|Caenorhabditis elegans Hypothetical pr... 30 1.7
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 29 3.8
Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein. 29 5.0
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 28 6.7
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 28 6.7
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 28 6.7
>Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 247 EKTKANSNLIRVTNNIV-PIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNI 423
EKT +N + VT++ PI P S P A + ++ P+A T+ T+A+ P
Sbjct: 42 EKTSSNQPMSTVTSSTTSPITP-STPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTT 100
Query: 424 MQ 429
+Q
Sbjct: 101 LQ 102
>Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 247 EKTKANSNLIRVTNNIV-PIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNI 423
EKT +N + VT++ PI P S P A + ++ P+A T+ T+A+ P
Sbjct: 42 EKTSSNQPMSTVTSSTTSPITP-STPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTT 100
Query: 424 MQ 429
+Q
Sbjct: 101 LQ 102
>Z70306-1|CAA94322.1| 355|Caenorhabditis elegans Hypothetical
protein C06G8.1 protein.
Length = 355
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 341 ILFPAGAGTLLGFIGTILFVTLMR 270
++FP G G+LL FI +LF+ L R
Sbjct: 188 LIFPNGVGSLLAFIQLLLFIVLPR 211
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 298 PIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISN-PNIMQM 432
P+K +P P GN P+ +P+ P ++T Q + + P I QM
Sbjct: 93 PVKTPPLPRPPGNLNPVQQPQIP-VQRTPPQCPPPPVPHPPQITQM 137
>Z81546-7|CAB04452.1| 320|Caenorhabditis elegans Hypothetical
protein F53A2.4 protein.
Length = 320
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 548 LNSDTPXNTNVAKLSNIPXPRTNGXTRASVALFXIDKRTXRIXL 679
L+SD P NT K N +G TRA V D+R + L
Sbjct: 247 LDSDPPINTKEVKPENSKLSDLDGETRAMVEKMMYDQRQKEMGL 290
>AF164431-1|AAF82633.1| 320|Caenorhabditis elegans NUD-1 protein.
Length = 320
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 548 LNSDTPXNTNVAKLSNIPXPRTNGXTRASVALFXIDKRTXRIXL 679
L+SD P NT K N +G TRA V D+R + L
Sbjct: 247 LDSDPPINTKEVKPENSKLSDLDGETRAMVEKMMYDQRQKEMGL 290
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 247 EKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTS 402
E+ K N TN +SVPA AG P+W R +K + +TS
Sbjct: 457 EENKENGTSTSTTNGA-----QSVPAAAGTDDPVWVLRDSYLKKMQREQRTS 503
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 247 EKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTS 402
E+ K N TN +SVPA AG P+W R +K + +TS
Sbjct: 485 EENKENGTSTSTTNGA-----QSVPAAAGTDDPVWVLRDSYLKKMQREQRTS 531
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +1
Query: 298 PIKPKSVPAPAGNKMPIWE--PRQPNAEKT 381
P KP P PA K P WE P +P A+ T
Sbjct: 130 PPKPADPPKPAALKKPPWEDDPDEPEADFT 159
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 247 EKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTS 402
E+ K N TN +SVPA AG P+W R +K + +TS
Sbjct: 457 EENKENGTSTSTTNGA-----QSVPAAAGTDDPVWVLRDSYLKKMQREQRTS 503
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,530,434
Number of Sequences: 27780
Number of extensions: 343094
Number of successful extensions: 931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -