Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0287.Seq
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put...    31   0.66 
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    29   2.7  
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta...    29   3.5  
At5g26160.1 68418.m03111 expressed protein                             29   4.7  
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t...    29   4.7  
At1g80170.1 68414.m09383 polygalacturonase, putative / pectinase...    29   4.7  
At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT...    28   6.2  

>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
           putative contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain
          Length = 772

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 268 NLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQA 393
           NL  VT    P  P++ P+P   K P + P  PNA   H QA
Sbjct: 244 NLFNVTIAPSP-SPETPPSPTSPKRPFFGPPSPNASAGHGQA 284


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/79 (24%), Positives = 32/79 (40%)
 Frame = +1

Query: 238 HSNEKTKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNP 417
           H ++  K +     ++ N+   +PK       N   +W PR   AE TH       +   
Sbjct: 147 HFSKPAKEDIFFPSLSPNLQKERPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGA 206

Query: 418 NIMQMNNIPFSTSLTAPGR 474
           +I  +     +T+LT  GR
Sbjct: 207 SINDIRVEVDNTNLTVTGR 225


>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 797

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 307 PKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNP 417
           P S P PA N  P+ +PR PN++   M +Q S+ + P
Sbjct: 466 PVSQPQPASNPFPVSQPR-PNSQPFSM-SQPSSTARP 500


>At5g26160.1 68418.m03111 expressed protein 
          Length = 1058

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 406 SLRSELACVFFRHSVDEAPKSASCSQLVQE 317
           +L+SE + +  +HSVD  PKS   SQ++ E
Sbjct: 374 ALKSEPSNLLPKHSVDGTPKSTFSSQVISE 403


>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 177

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/102 (21%), Positives = 37/102 (36%)
 Frame = +1

Query: 289 NIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAP 468
           N+ P KP++VP+P         P  P+         T ++  P++   N  P +   T P
Sbjct: 31  NLSP-KPRTVPSPKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSVPSPNPTPVTPPRT-P 88

Query: 469 GREQYAGVGASTAHIHRSTRESLPTSAEFRHPXQHQCCQTFQ 594
           G      + A    +  +    L  + +   P    CC   Q
Sbjct: 89  GSSGNCPIDALRLGVCANVLSGL-LNVQLGQPSAQPCCSLIQ 129


>At1g80170.1 68414.m09383 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase GI:7381227 from
           [Lycopersicon esculentum]; contains Pfam profile
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 444

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 368 MPKKHTCKLRPQRYQIPILCR*TISLSQQV*LHLAENNMPVWE 496
           +P+ +TC LRP     P   R T+ +S  +   +A N+  VWE
Sbjct: 90  VPENYTCLLRPIDLSGPCKARLTLQISGTI---IAPNDPDVWE 129


>At5g11060.1 68418.m01292 homeobox protein knotted-1 like 4 (KNAT4)
           identical to homeobox protein knotted-1 like 4 ( KNAT4)
           SP:P48001 from [Arabidopsis thaliana]
          Length = 393

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 407 YQIPILCR*TISLSQQV*LHLAENNMPVWELQQPI--FTGV 523
           + + +LC     L Q V +H  E  M  WE++Q +  FTGV
Sbjct: 193 HYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGV 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,229
Number of Sequences: 28952
Number of extensions: 311332
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)