Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0286.Seq
         (298 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)                  26   4.7  
SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)         26   6.3  
SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)                    25   8.3  

>SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)
          Length = 341

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 160 PFTRAARRYVKFGNISTRVSSMTTIS 237
           PF+ AA +Y+ +  I+  V SM TIS
Sbjct: 90  PFSYAACQYMGYSGIAIAVGSMQTIS 115


>SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)
          Length = 242

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = -2

Query: 225 HRRHPRRYVSEFNISSCSTCKW--*CTESRGRSMGRSKNRRVLHTYSYRDRS 76
           H R PR Y     ISS   C W   C     RS   S +     T S R RS
Sbjct: 5   HARDPRCYNGRVPISSPYRCDWPNGCVTEVHRSRCHSAHHHADWTCSLRGRS 56


>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
          Length = 348

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 132 MGRSKNRRVLHTYSYR---DRSKG*YLKVSKFSLQR 34
           MG+ KNR V    SYR    +SK   +KV K ++ R
Sbjct: 1   MGKGKNRSVYRHSSYRTLPTKSKSLRMKVGKSNIPR 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,054,936
Number of Sequences: 59808
Number of extensions: 70992
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)