Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0286.Seq
         (298 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   3.2  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z70211-2|CAA94158.2|  272|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 160 PFTRAARRYVKFGNISTRVSS---MTTISVKCNSEFCVN 267
           PF   AR+Y++F   S R  S   +  +   C+++ C N
Sbjct: 48  PFNFHARKYLRFARFSRRGCSKCCLLRVQANCSADLCHN 86


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 160 PFTRAARRYVKFGNISTRVSS---MTTISVKCNSEFCVN 267
           PF   AR+Y++F   S R  S   +  +   C+++ C N
Sbjct: 48  PFNFHARKYLRFARFSRRGCSKCCLLRVQANCSADLCHN 86


>Z70211-2|CAA94158.2|  272|Caenorhabditis elegans Hypothetical
           protein K11E4.2 protein.
          Length = 272

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 189 NISSCSTCKW*CTESRGRSMGRSKNRRVLHTYSYRDRSKG*YLKV 55
           NISS +   +   + R   +GR KN ++ H Y YR+     YL +
Sbjct: 92  NISSFTITCFHIQDGRTHLLGRYKNNQISH-YKYREIDGRHYLGI 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,450,337
Number of Sequences: 27780
Number of extensions: 51423
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)