Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0285.Seq
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.0  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   4.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.1  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -3

Query: 544 GWTRDVSS-QIRLSTDRLQ-RTNELAFSYTIAFKSTHPEPAGGAFHMTWTS 398
           G  R++SS QI      L   TNEL FS  + F   +P       H+T  S
Sbjct: 122 GLRRNLSSLQIGEKIQALDPSTNELVFSEVLLFLDYNPSQKRQFLHITLAS 172


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 504 LTVFSEPTNSHFHTPSPSKARILNQPVALS 415
           +T+F + T+++FH  SP    + ++  ++S
Sbjct: 193 ITLFGDGTSANFHYLSPQSRGLFHRGWSMS 222


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 415 HMTWTSVLGRSSASTTEFVHS 353
           HM   SV   ++A   EFVHS
Sbjct: 55  HMPPHSVFAANNAEFPEFVHS 75


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 415 HMTWTSVLGRSSASTTEFVHS 353
           HM   SV   ++A   EFVHS
Sbjct: 55  HMPPHSVFAANNAEFPEFVHS 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,146
Number of Sequences: 336
Number of extensions: 4305
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)