Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0285.Seq
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   3.9  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   3.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.9  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    25   8.9  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 136 LQVTLNLLQDLDLARRPVPRTLGPATLK 53
           L V L  L DL +  RP P  LGP   K
Sbjct: 756 LSVDLATLGDLKVVERPPPMNLGPHAFK 783


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 550 CCACDDAKYRMVFEGSGLRKHI 615
           CC   DAKYR    G+ ++ HI
Sbjct: 412 CCVKLDAKYRWCLSGTPIQNHI 433


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 526  SSQIRLSTDRLQRTNELAFSYTIAFKSTHP 437
            SS+ RLST      N  AFS T+  K THP
Sbjct: 1414 SSENRLST---LMANFYAFSLTVMMKPTHP 1440


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 192 EICRDSGRFPHS*RSTTVCGLKIILDPLNPDTR 290
           E+ +D    P+  R++ + GL+ IL  LNPDT+
Sbjct: 250 EVMKDKVHQPY--RASLIPGLQNILATLNPDTQ 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,755
Number of Sequences: 5004
Number of extensions: 70775
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)