Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0285.Seq
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0320 + 29235266-29235305,29235409-29236682 30 2.3
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 29 3.1
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 29 4.0
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 29 5.3
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 5.3
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347... 28 7.1
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257 28 7.1
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 28 7.1
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 7.1
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 28 9.3
>05_07_0320 + 29235266-29235305,29235409-29236682
Length = 437
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 709 APRKVKFLGLSWPGCPSEK*LATELGVGKFFGCVCGDQSP 590
AP+ F G+ W G P A + +G C+ G SP
Sbjct: 27 APKAYCFYGIEWTGVPYLPGTAAAIYIGNTNSCIAGYHSP 66
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 520 ARTRLWSIPDCCACDDAKYRMVFEGSGLRKHIQR 621
++ LW + + D+ R +FEG L +H+ R
Sbjct: 40 SKCELWRVQELLTLDEKNPRRIFEGEALLRHMNR 73
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 142 HYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAG 252
HY+ I+ G + + D ++T+ G RT +V ++AG
Sbjct: 325 HYQHIIEGTINAMSRDDERLLTIEGCRTALLVLRYAG 361
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 570 SVVAGAAVGD-GPETCPRRFVCQLTVFSEPTNSHFHTPSPSKARIL 436
+ VAG+ VG G P+ QLT+F + + F+ SP KA+ L
Sbjct: 171 NAVAGSTVGVYGTRDMPKAKAAQLTIFYAGSVNVFNNVSPEKAQEL 216
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 466 YTIAFKSTHPEPAGGAFHMTWTSVLGRSSASTTEFVHS 353
Y KSTHP+ + H T+VLG S +H+
Sbjct: 97 YHFKGKSTHPDDVIASHHDMLTTVLGSKEDSLASIIHN 134
>11_01_0449 -
3473662-3475049,3476026-3476128,3476215-3476439,
3476689-3476856,3477414-3477529,3477640-3477792,
3477879-3478022,3478980-3479583
Length = 966
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = -1
Query: 558 GAAVGDGPETCPRRFVCQLTVFSEPTNSHFHTPSPSKARILNQPVALST*PGLQFWADRQ 379
G A G G T L S P S +PSPS L+ P+AL+ F AD
Sbjct: 486 GNAGGAGRRTMRNSLQLNLAPGSSPPTSLLPSPSPSDLPSLHLPLALA----FSFLADPS 541
Query: 378 PRQR 367
P R
Sbjct: 542 PLPR 545
>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
Length = 421
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 309 PVCWAPSLCPGSKD 268
PVCWAP PGS D
Sbjct: 241 PVCWAPPSAPGSYD 254
>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
Length = 1141
Score = 28.3 bits (60), Expect = 7.1
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 229 HECGNRPESRHISDPAHIAQLLR*QSACSDCLQV-TLNLLQDLD-LARRPVPRTLGPATL 56
HE +R +S +SDP+ + L CS V T + L+ L + VP T+ P L
Sbjct: 540 HEHNDRIKS--VSDPSRLRSLYHFDVTCSSFPSVGTPRSARYLNVLELQDVPITVLPEEL 597
Query: 55 KFSDCPFYLGLRRTK 11
YLGLRRTK
Sbjct: 598 SGLFNLRYLGLRRTK 612
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 591 GLWSPQTHPKNFPT-PSSVANHFSDGHPGQLKPKNF 695
GL P H N PT P+S N G PG + NF
Sbjct: 1241 GLTPPNHHGSNGPTTPNSTLNSRLSGSPGTVLSNNF 1276
>01_06_0840 +
32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 387 LPKTEVQVMWKAPPAGSGCVLLKAMVYENASSL 485
+P +E + ++K PPAGS ++L + E A ++
Sbjct: 658 IPSSEQKKVFKRPPAGSRKIILSTNIAETAVTI 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,613,619
Number of Sequences: 37544
Number of extensions: 547212
Number of successful extensions: 1573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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