Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0285.Seq
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    27   0.14 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.58 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 500 PSSANQRTRIFIHHRLQKHAS*TSRWRFPHDLD 402
           P+   +RT+ FI H+  +++     WR P  +D
Sbjct: 9   PTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGID 41


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 701 KSEILRLELARMPVREVISHRAWGREVLWMCLRRPEPSNT 582
           K+E ++ E  ++  REV  H A  +E L +   + EP +T
Sbjct: 140 KTESIQPETTKVDTREVQPHDASEKEQLGLASVKAEPGST 179


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 372  VEADDLPKTEVQVMWKAPP 428
            +  DDL +  ++V WK PP
Sbjct: 983  IRVDDLDQHTLKVTWKPPP 1001


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 109 DLDLARRPVPRTLGPATLKFSDCPFYLGLRRTKP 8
           D D  R P       AT +    PF +G RRT P
Sbjct: 383 DSDGIRLPCREVEAAATARNVVAPFLIGSRRTSP 416


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 627 PTPSSVANHFSDGHPGQLKPKNFT 698
           P+PSS ++ FS   P  L  +N+T
Sbjct: 91  PSPSSPSSFFSSVSPTSLGSENYT 114


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 210 GRFPHS*RSTTVCGLKIILDPLNPDTRRAPSKQGQF 317
           GR  +S R T   G  + L+    DT+R P + G F
Sbjct: 116 GRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSF 151


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 61  WLGLVSAALACELNPGPGVGSKSPGD 138
           +L   S  LA E    PG GSK P D
Sbjct: 42  FLQCASLKLAFEPRRNPGPGSKGPRD 67


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 301 LGALLVSGFKGSRIILS 251
           L A++VSG KGS I +S
Sbjct: 227 LKAMVVSGSKGSNINIS 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,913
Number of Sequences: 438
Number of extensions: 4755
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)