Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0285.Seq
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 30 1.5
At5g52910.1 68418.m06566 timeless family protein contains Pfam d... 30 1.9
At5g51490.1 68418.m06386 pectinesterase family protein contains ... 30 1.9
At5g41830.1 68418.m05093 F-box family protein-related contains a... 29 2.6
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas... 29 3.4
At5g47690.1 68418.m05887 expressed protein 29 4.5
At5g42710.1 68418.m05202 hypothetical protein 29 4.5
At5g18610.1 68418.m02203 protein kinase family protein contains ... 28 5.9
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro... 28 5.9
At4g11060.1 68417.m01797 single-strand-binding family protein co... 28 7.8
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 28 7.8
At1g27020.1 68414.m03294 expressed protein 28 7.8
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/58 (37%), Positives = 28/58 (48%)
Frame = -1
Query: 600 TRALEHHPIFSVVAGAAVGDGPETCPRRFVCQLTVFSEPTNSHFHTPSPSKARILNQP 427
T AL P F +++ AA G GP R+ V +PT+S P P K R NQP
Sbjct: 7 TIALSSTPTF-LLSSAAAGPGPNNFNRQEAAMTMVQQQPTSS--VAPPPKKRR--NQP 59
>At5g52910.1 68418.m06566 timeless family protein contains Pfam
domains PF05029: Timeless protein C terminal region and
PF04821: Timeless protein
Length = 1141
Score = 29.9 bits (64), Expect = 1.9
Identities = 30/125 (24%), Positives = 49/125 (39%)
Frame = +3
Query: 324 FADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVYENASSLVR*RRS 503
F T T+ + T +V++ +P T M K P G G + +V+E+ V +
Sbjct: 292 FGGTFTRVTMDGTKAVLKG--IPSTTESTMLK-PQQGRGAT--EKIVWEHGPMSV----T 342
Query: 504 VDKRICEDTSLVHPXXXXXXXXXI*DGVRGLWSPQTHPKNFPTPSSVANHFSDGHPGQLK 683
DK +CED HP + + S Q H + +P+ S+ Q
Sbjct: 343 NDKSLCEDIEKEHPSIQNSDIVTFFQVAQSITSFQFHKSSASSPAIETEETSELTTNQKA 402
Query: 684 PKNFT 698
NF+
Sbjct: 403 GVNFS 407
>At5g51490.1 68418.m06386 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 536
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 409 TWTSVLGRSSASTTEFVHSSSNLVKVSAKSWNCPCLLGALLVSGFKGS 266
T T G S + T+F+ + K+S NC + GALL +G KG+
Sbjct: 148 TETCRRGSSDLNVTDFITPIVSNTKISHLISNCLAVNGALLTAGNKGN 195
>At5g41830.1 68418.m05093 F-box family protein-related contains a
novel domain similar to F-box that is shared among other
proteins in Arabidopsis; similar to proteins At3g54160,
At1g47920 (syntaxin SYP81), At3g44180, At1g56610,
At3g58890, At1g48390, At3g59270 [Arabidopsis thaliana]
Length = 463
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 393 KTEVQVMWKA-PPAGSGCVLLKAMVYENASSLVR*RRS 503
KT + V WK+ PP C L+ +V+E + + R RRS
Sbjct: 296 KTGLHVGWKSLPPLLKNCPNLQTLVFEGLNHIYRKRRS 333
>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
/ asparagine-tRNA ligase 2 (SYNC2) nearly identical to
SP|Q9SW95; HMM hit: tRNA synthetases class II
Length = 638
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = -3
Query: 538 TRDVSSQIRLS----TDRLQRTNELAFSYTIAFKSTHPEPAGGAFHM-TWTSVLGRSSAS 374
T D++SQI + T L + +L FS + T+ A G FH+ ++ S LG+
Sbjct: 342 TNDLASQIEMKQKSKTGTLVKPEKLDFSKDFFGRDTYLT-ASGRFHLESYASALGKVYTF 400
Query: 373 TTEFVHSSSNLVKVSAKSWN 314
F+ + + A+ WN
Sbjct: 401 GPRFIADKIDNARHLAEKWN 420
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = +1
Query: 262 SLIL*TRTQGGRPANRDXXXXXXXXXXXXTKNVRTPLSRL-TICPKLKSRSCGKRHRLVQ 438
+LI+ R+ G +P N D K RTP L + PK +S H V+
Sbjct: 1480 NLIILFRSSGSKPKNPDGVQRDEDPVTTTPKGKRTPKKNLKQLHPKDTPKSLSLEHEKVE 1539
Query: 439 DACF*RRWCMKMRVRWFAEDGQLTNES 519
RR + + E G+ +ES
Sbjct: 1540 SRNKKRRSSALPKTEYSGEAGEEKSES 1566
>At5g42710.1 68418.m05202 hypothetical protein
Length = 807
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 508 STDRLQRTNELAFSYTIAFKSTHPEPAGGAFHMTWTSVLGRSSASTT 368
S ++L + LAF+ A K+T +P+G A +++ +GR S T
Sbjct: 81 SMEKLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGET 127
>At5g18610.1 68418.m02203 protein kinase family protein contains
eukaryotic protein kinase domain, PROSITE:PS00107
Length = 513
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 693 NS*A*VGPDARQRSD*PQSLGSGSSLDVFAETRA 592
NS + GP + D +SLG GSSLD AETR+
Sbjct: 374 NSRSGSGPPFIRTRDDRRSLGDGSSLDSPAETRS 407
>At1g60550.1 68414.m06816 naphthoate synthase, putative /
dihydroxynaphthoic acid synthetase, putative / DHNA
synthetase, putative contains similarity to MENB from
Escherichia coli [SP|P27290], Bacillus subtilis
[SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 337
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -1
Query: 645 PQSLGSGSSLDVFAETRALEHHPIFSVVAGAAVGDGPETCPRRFVCQLTVFSE 487
P +G + LD+ + R L P+ ++VAG AVG G VC LT+ ++
Sbjct: 152 PNDVGRLNVLDLQVQIRRLPK-PVIAMVAGYAVGGGHIL---HMVCDLTIAAD 200
>At4g11060.1 68417.m01797 single-strand-binding family protein
contains Pfam domain PF00436: Single-strand binding
protein family
Length = 201
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 511 NESARTRLWSIPDCCACDDAKYRMVFEGSGLRK 609
N+S + + SIP+ C D K RM+ G + K
Sbjct: 158 NDSISSEVKSIPEICVRRDGKIRMIKYGESISK 190
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 597 WSPQTHPKNFPTPSSVANHFSDGHPGQLKPKN 692
W +T K F +P NH H + KP +
Sbjct: 230 WMCRTCSKKFSSPEECKNHLGQEHAAEFKPSS 261
>At1g27020.1 68414.m03294 expressed protein
Length = 308
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 330 DTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 428
D+L F + V D PK +VQV+W +PP
Sbjct: 71 DSLASFFMDYGYKVGGRLDFPKKKVQVLWLSPP 103
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,107,724
Number of Sequences: 28952
Number of extensions: 406040
Number of successful extensions: 1115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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