Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0284.Seq
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889...    32   0.43 
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602...    32   0.57 
11_01_0336 - 2517349-2518725                                           28   7.1  

>09_04_0447 +
           17688248-17688319,17688414-17688515,17688852-17688981,
           17689198-17689290,17689363-17689451,17689889-17689969,
           17690118-17690207,17690653-17690772,17690877-17690927,
           17691125-17691171,17691321-17691378,17691451-17691507
          Length = 329

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 256 NHDPQWSEEQIISAKFNYNGLLIGRDEVDYMRKATILIFEILEKAWALRDCALIDMKIEF 435
           +HD   + E+II      N  L+ +++ D  R   + +F   ++        L+D K EF
Sbjct: 153 DHDVPVTPEEII------NSGLMSKEDFDEARSKALSLFAYGQEVALENGLILVDTKYEF 206

Query: 436 GVDTEGSIVLAD 471
           G   +G+I+L D
Sbjct: 207 GKTADGTIMLID 218



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 80  AFVKIASETAFLSKKCEMIPIEWVTRRLATGS 175
           A V    +   ++K+C + P+E+V R   TGS
Sbjct: 78  AVVSSPDKNVTIAKRCSVFPVEFVVRGYVTGS 109


>11_01_0728 +
           6023361-6023495,6024880-6025212,6025306-6025361,
           6025526-6025684,6025790-6025889,6026481-6026623,
           6026728-6026833,6027139-6027277,6027363-6027631,
           6027734-6027820
          Length = 508

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = -3

Query: 524 H*SFITEGHNLQESESMTSANTMLPSVSTPNSI--FMSISAQSRRAQAFSKISNIRIVAF 351
           H S I    + Q ++ + S        STP     F+SISA+ R A A  ++  ++ + +
Sbjct: 87  HSSDIYSSPDTQGTDKIASGGASSTRSSTPPDSPGFLSISAEFRSAPAMGELGALQSIVY 146

Query: 350 LM*STSSRPIRR-PL*LNLAEMICSSDHWGS 261
              S      R+ PL ++  ++ CS D W +
Sbjct: 147 HRGSLRLLDQRKLPLEVDYIDVKCSGDGWNA 177


>11_01_0336 - 2517349-2518725
          Length = 458

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -3

Query: 614 WSFTQAKVAFDCV*ISCSHRCEVPVHLFVTH*SFITEGHNLQESESMTSANTMLPSVST 438
           WSFT A ++ D   +  SH C   + L+      I+ G  L   E  +S     PS ST
Sbjct: 207 WSFTAATISIDDGGLFTSHHCWRDMALYHGKLYSISTGEELFVHEFSSSEAVSSPSSST 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,426,796
Number of Sequences: 37544
Number of extensions: 417976
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)