Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0281.Seq
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    28   1.3  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    28   1.7  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.9  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.7  

>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 125 HSFKKFHGELCNTKAPKSDILVNQLKYN*KQIFLVES 15
           H F  F   LC   A  +  + +Q K N +QIF+  S
Sbjct: 12  HRFHPFRPVLCEDSASAATTITSQFKLNYRQIFIGSS 48


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 541 STSPSICHDTSSINNPNNYFILNQYSNGHHWSSPIHVLHCFVENGE 678
           S S S  HD+S    PN    +N+  +       +HV +C V++ E
Sbjct: 223 SVSKSDDHDSSLCQPPNFVTSINKAGSSSDHGGELHVTYCPVDHNE 268


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 538  SSTSPSICHDTSSINNPNNYFILNQYSNGHHW 633
            +ST+  +  D SS  NPNNY +LN + N + W
Sbjct: 1015 NSTTSGLSRDESS--NPNNYELLNAF-NQNTW 1043


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 454 YNNIVCTTAFINSNITQW 401
           Y NIVC+   ++ N+T W
Sbjct: 44  YINIVCSRPIVDENVTTW 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,491
Number of Sequences: 5004
Number of extensions: 59830
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)