Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0281.Seq
         (757 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009822-1|AAH09822.1|  190|Homo sapiens NUP160 protein protein.       53   1e-06
AK026236-1|BAB15406.1|  190|Homo sapiens protein ( Homo sapiens ...    53   1e-06
D83781-1|BAA12110.1| 1314|Homo sapiens nuclear pore protein prot...    52   2e-06
BC125228-1|AAI25229.1| 1436|Homo sapiens nucleoporin 160kDa prot...    52   2e-06
BC125227-1|AAI25228.1| 1436|Homo sapiens nucleoporin 160kDa prot...    52   2e-06
BC031233-1|AAH31233.2|  468|Homo sapiens TMEM146 protein protein.      30   7.8  

>BC009822-1|AAH09822.1|  190|Homo sapiens NUP160 protein protein.
          Length = 190

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
 Frame = +2

Query: 257 YKDSTKFY--TRNRFIYWQTTSDAIEIXXXXXXXXXXXXXXR-----CKVAPGTPPLSNI 415
           Y +S K +  TRNRFI+W+T+ D +E+              R     C V PG       
Sbjct: 54  YVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPGG------ 107

Query: 416 TVYERSSTNNVVILAATVSSVHRLVFPHPSI*XKSV 523
            VY   + N V+IL  T  +VHRL+ PHPS   +SV
Sbjct: 108 -VYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSV 142


>AK026236-1|BAB15406.1|  190|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22583 fis, clone HSI02596. ).
          Length = 190

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
 Frame = +2

Query: 257 YKDSTKFY--TRNRFIYWQTTSDAIEIXXXXXXXXXXXXXXR-----CKVAPGTPPLSNI 415
           Y +S K +  TRNRFI+W+T+ D +E+              R     C V PG       
Sbjct: 54  YVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPGG------ 107

Query: 416 TVYERSSTNNVVILAATVSSVHRLVFPHPSI*XKSV 523
            VY   + N V+IL  T  +VHRL+ PHPS   +SV
Sbjct: 108 -VYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSV 142


>D83781-1|BAA12110.1| 1314|Homo sapiens nuclear pore protein
           protein.
          Length = 1314

 Score = 52.4 bits (120), Expect = 2e-06
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = +2

Query: 257 YKDSTKFY--TRNRFIYWQTTSDAIEIXXXXXXXXXXXXXXR-----CKVAPGTPPLSNI 415
           Y +S K +  TRNRFI+W+T+ D +E+              R     C V PG       
Sbjct: 52  YVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPGG------ 105

Query: 416 TVYERSSTNNVVILAATVSSVHRLVFPHPS 505
            VY   + N V+IL  T  +VHRL+ PHPS
Sbjct: 106 -VYVSETQNRVIILMLTNQTVHRLLLPHPS 134


>BC125228-1|AAI25229.1| 1436|Homo sapiens nucleoporin 160kDa
           protein.
          Length = 1436

 Score = 52.4 bits (120), Expect = 2e-06
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = +2

Query: 257 YKDSTKFY--TRNRFIYWQTTSDAIEIXXXXXXXXXXXXXXR-----CKVAPGTPPLSNI 415
           Y +S K +  TRNRFI+W+T+ D +E+              R     C V PG       
Sbjct: 88  YVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPGG------ 141

Query: 416 TVYERSSTNNVVILAATVSSVHRLVFPHPS 505
            VY   + N V+IL  T  +VHRL+ PHPS
Sbjct: 142 -VYVSETQNRVIILMLTNQTVHRLLLPHPS 170


>BC125227-1|AAI25228.1| 1436|Homo sapiens nucleoporin 160kDa
           protein.
          Length = 1436

 Score = 52.4 bits (120), Expect = 2e-06
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
 Frame = +2

Query: 257 YKDSTKFY--TRNRFIYWQTTSDAIEIXXXXXXXXXXXXXXR-----CKVAPGTPPLSNI 415
           Y +S K +  TRNRFI+W+T+ D +E+              R     C V PG       
Sbjct: 88  YVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPGG------ 141

Query: 416 TVYERSSTNNVVILAATVSSVHRLVFPHPS 505
            VY   + N V+IL  T  +VHRL+ PHPS
Sbjct: 142 -VYVSETQNRVIILMLTNQTVHRLLLPHPS 170


>BC031233-1|AAH31233.2|  468|Homo sapiens TMEM146 protein protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 663 RGKW*SYICTGIWDMKVXGSLVPYKTGQ 746
           R +W  ++C GIWD +  G+++ + TG+
Sbjct: 40  RPRWKDHLCPGIWDQR--GNIIEFLTGE 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,774,870
Number of Sequences: 237096
Number of extensions: 2083805
Number of successful extensions: 2974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2969
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)