Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0281.Seq
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 638  APYMFFTASWKMVKLYLHWHLGHEG 712
            AP ++ T+S     + LHW  GH G
Sbjct: 1407 APVLYVTSSTSS-SILLHWKSGHNG 1430


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 638  APYMFFTASWKMVKLYLHWHLGHEG 712
            AP ++ T+S     + LHW  GH G
Sbjct: 1403 APVLYVTSSTSS-SILLHWKSGHNG 1426


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 471 ETVAANITTLFVLLRS*TVILLSGG 397
           E++ ANI T    +R   VILL  G
Sbjct: 42  ESIIANIPTWLSFIRIVLVILLRAG 66


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 123 MPVTFKEIAPNHNIPEKWKEIVLNTGGT 206
           +P+TF+ +  N+ I  +    V+  G T
Sbjct: 367 LPITFRCLEENNKIDSRVTRFVVAVGAT 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,153
Number of Sequences: 438
Number of extensions: 4404
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)