Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0280.Seq
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   2.2  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.2  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   3.9  

>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 414 LLKLAINQRRSNVDXKXKELSELKTYNTELALRASKISEKGSKSGYPFR 560
           LL  + N R  ++  + +  +   +Y T +A   +  S K S S YP R
Sbjct: 128 LLSFSSNHRLHSMPSQLQPFNNASSYTTPMAPFTASFSNKVSHSAYPTR 176


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +3

Query: 363  KKDSLLTEAKQCRDKIDLLKLAINQRRSNVDXKXKELSELKTYNTELALRASKISEK 533
            K   L  E ++    ++ L+  IN+ ++ +  K   L+ +K YN+   LR   +  K
Sbjct: 1289 KIQELEKEVEKLNASLNPLQTEINELKAEIGAKTASLNLMKEYNSRWKLRFQSVLNK 1345


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 171 VLPVTLC*RNSKISRSLAFSEITR-SHFIR 85
           V P+ LC RNSK    LA +  T+ +HFIR
Sbjct: 82  VSPLQLCDRNSKRFADLAVAANTKFTHFIR 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,833
Number of Sequences: 5004
Number of extensions: 46390
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)