Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0280.Seq
         (766 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   5.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   7.8  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 17/81 (20%), Positives = 37/81 (45%)
 Frame = +3

Query: 300  RLKMNRKHILDRCERLLAPKLKKDSLLTEAKQCRDKIDLLKLAINQRRSNVDXKXKELSE 479
            RLK       +R  R  +   K  +L  +  +C+   D      +  + NVD   ++++E
Sbjct: 830  RLKEQVDWQAERVARTHSDPEKVRALEAKVAECKQAFDSSSTKADAMQKNVDRYTEQINE 889

Query: 480  LKTYNTELALRASKISEKGSK 542
            +   N+++ +  +KI+  G +
Sbjct: 890  IT--NSKVKVLQTKINGLGKQ 908



 Score = 23.4 bits (48), Expect = 7.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 363  KKDSLLTEAKQCRDKIDLLKLAINQRRSNVDXKXKELSELKTYNTE 500
            ++  L  EA + R++++ +KLAI +         KE+  L+    E
Sbjct: 957  ERTQLEEEANKLREELEEMKLAIEKAHEGSSSIKKEIVALQKREAE 1002


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 279 EKLSKLLRLKMNRKHILDRCERLLAPKLKKDSLLTE-AKQCRDKIDLLKLAINQRRSNV 452
           E+LSK  + KM  K    +C+ L A  +  D    +  + CR  I+ L   ++Q+R  V
Sbjct: 661 EQLSKYQQTKMKVKRQEQKCKELTARLVNVDEEKVKFERSCRTIIEQL---LDQQRRKV 716


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,076
Number of Sequences: 2352
Number of extensions: 10587
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)