Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0280.Seq
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01350.1 68417.m00175 DC1 domain-containing protein contains ...    29   3.4  
At1g77890.1 68414.m09078 expressed protein                             29   4.5  
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ...    28   5.9  
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter...    28   5.9  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    28   7.8  

>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +1

Query: 133 DFRVSSTESDGQ-YTKCHLCYT----VKRNFYCTDCIKEGNFVHSSCLIRTDI 276
           D R+  T   G  Y+KC +C+      K  + C+ C      VHS+C +RTD+
Sbjct: 290 DHRIYLTHHLGTGYSKCGVCHENVNQYKGAYSCSVCPHYA--VHSTCAVRTDV 340


>At1g77890.1 68414.m09078 expressed protein
          Length = 460

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 172 TKCHLCYTVKRNFYCTDCIKEG 237
           TKC +CY   R   C DC+  G
Sbjct: 5   TKCAVCYKSFRPSICVDCVNRG 26


>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 364

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 479 AKNLQYRIGVTGFQDI 526
           A+NL YR+G+TGF D+
Sbjct: 85  AENLSYRLGLTGFADL 100


>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
           protein (GI:17483747) [Mus musculus]
          Length = 243

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +3

Query: 306 KMNRKHILDRCERLLAPKLKKD-SLLTEA-KQCRDKIDLLKLAINQRRSNVD--XKXKEL 473
           K   KH+   CER L  KL  D SL+T A     +   +L  A++Q   N+D   K +E 
Sbjct: 148 KYQVKHLKSYCERFLVTKLSPDNSLMTYAFAHQHNAKHVLDAALSQIVENMDKLTKREEY 207

Query: 474 SEL 482
            EL
Sbjct: 208 MEL 210


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +1

Query: 133 DFRVSSTESDGQ-YTKCHLCYT----VKRNFYCTDCIKEGNFVHSSCLIRTDI 276
           D R+  T   G  Y++C +C+      K  + C+ C      VHS+C +RTD+
Sbjct: 290 DHRIYLTHHLGTGYSECGVCHKNVSQYKGAYSCSVCPNYA--VHSTCAVRTDV 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,932,976
Number of Sequences: 28952
Number of extensions: 243098
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)