Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0278.Seq
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 148 1e-36
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 131 9e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 91 1e-19
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 65 9e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 61 1e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 6e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 58 1e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 56 7e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 55 1e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 54 2e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 53 4e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 2e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 47 3e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 47 3e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 47 3e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 6e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 8e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 2e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 2e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 40 4e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 37 0.004
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 34 0.019
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.54
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.6
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 28 1.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.9
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 27 2.9
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.8
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 27 3.8
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 5.0
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.6
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 6.6
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 6.6
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 6.6
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 25 8.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 8.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 8.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 148 bits (358), Expect = 1e-36
Identities = 70/102 (68%), Positives = 88/102 (86%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT
Sbjct: 67 TGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTL 126
Query: 436 VREDIRQLEXGVHVVVGTPGRVYDR*LVVRFMPTPSNFLFLM 561
VR+D+ L+ GVHVVVGTPGRV+D + R +PT + +F++
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHDM-IQRRALPTDAVQMFVL 167
Score = 96.3 bits (229), Expect = 4e-21
Identities = 42/61 (68%), Positives = 54/61 (88%)
Frame = +2
Query: 71 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 250
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 251 S 253
S
Sbjct: 65 S 65
Score = 60.5 bits (140), Expect = 3e-10
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
I RRAL + +++FVLDEADEMLSRGFKDQI+D+F++L
Sbjct: 152 IQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLL 189
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 665 PDDVLEVSRCFMRDPV 712
P DVLEV+ FMRDP+
Sbjct: 203 PQDVLEVTTKFMRDPI 218
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 131 bits (317), Expect = 9e-32
Identities = 61/84 (72%), Positives = 71/84 (84%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+
Sbjct: 69 TGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTS 128
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
V DI++L+ G HVV GTPGRV D
Sbjct: 129 VGNDIKKLDYGQHVVSGTPGRVTD 152
Score = 76.2 bits (179), Expect = 5e-15
Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Frame = +2
Query: 71 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 247
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 248 QS 253
QS
Sbjct: 66 QS 67
Score = 49.6 bits (113), Expect = 5e-07
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
I RR L +K+ +LDEADE+L++GFK+QI+D+++ L
Sbjct: 154 IRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYL 191
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 91.5 bits (217), Expect = 1e-19
Identities = 45/84 (53%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I L+++DT + Q LIL PTRELA Q +V LG H+N K GGT
Sbjct: 92 TGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTT 151
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH+VVGTPGRV D
Sbjct: 152 LRDDIIRLNDTVHIVVGTPGRVLD 175
Score = 54.4 bits (125), Expect = 2e-08
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +2
Query: 23 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 190
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 191 IQQRAIMPCIQGRDVIAQAQS 253
IQ+ +I + GRD++A+A++
Sbjct: 70 IQEESIPIALSGRDILARAKN 90
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 65.3 bits (152), Expect = 9e-12
Identities = 37/92 (40%), Positives = 50/92 (54%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKC 411
C + +GKTA F++ I+++ ALIL PTRELA QI + ALG +LN K
Sbjct: 47 CIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKH 106
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+GG ++ L HVVV TPGR+ D
Sbjct: 107 ALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
Score = 32.3 bits (70), Expect = 0.076
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
IK V+DEAD +LS F D + D F +L
Sbjct: 154 IKFLVMDEADRLLSPTFADDLDDCFSVL 181
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKT 53
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G + K
Sbjct: 164 TGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFG 218
Query: 436 VREDI-RQLEXGVHVVVGTPGRVYD 507
+++ + + + +V+GTPG V D
Sbjct: 219 IKDSVPKGAKIDAQIVIGTPGTVMD 243
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQS 253
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QS
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQS 162
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEML-SRGFKDQ 599
RR L A IK+FVLDEAD ML +G DQ
Sbjct: 247 RRQLDARDIKVFVLDEADNMLDQQGLGDQ 275
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 6e-10
Identities = 30/84 (35%), Positives = 49/84 (58%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG +
Sbjct: 94 SGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMD 153
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ L HV+V TPGR+ D
Sbjct: 154 MVTQAVALSKKPHVLVCTPGRLMD 177
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +2
Query: 89 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
D+ ++ +TF ++ + +EL GF+ P+ IQQ AI + RDVI AQ+
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQT 92
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 58.4 bits (135), Expect = 1e-09
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKC 411
+GKTA F I ++ I + E A++LAPTRELAQQIQ + L +C
Sbjct: 297 SGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRC 356
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +GG E Q+ G H+VV TPGR+ D
Sbjct: 357 VSVVGGHAFEEQSFQMSQGAHIVVATPGRLLD 388
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ RR + V+DEAD ML GF+D ++ + L
Sbjct: 390 LERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSL 427
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 55.6 bits (128), Expect = 7e-09
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKT F I IL+ + + QAL++APTRELA QI + + N + + GG
Sbjct: 170 SGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGG 229
Query: 430 TNVREDIRQLEXGVHVVVGTPGRVY 504
V++ R L HVVV TPGR++
Sbjct: 230 LAVQKQQRLLNKHPHVVVATPGRLW 254
Score = 28.7 bits (61), Expect = 0.94
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
V + +L E+L + GF KP IQ I G D+I +A + K L
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTL 174
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ E L+L TRELA QI+ +L + + GG N
Sbjct: 100 GKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGIN 159
Query: 436 VREDI---RQLEXGVHVVVGTPGRV 501
+++D+ + H+VV TPGR+
Sbjct: 160 IKQDMEAFKDKSKSPHIVVATPGRL 184
Score = 45.6 bits (103), Expect = 8e-06
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEK 265
F D LK ELLR I GFE PS +QQ I I G DV+ QA+S + K
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGK 101
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.4 bits (125), Expect = 2e-08
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
+GKTA F + IL+++ + + LIL PTRELA Q V + + CIG
Sbjct: 307 SGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIG 366
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G +++ ++L +V+ TPGR D
Sbjct: 367 GLSLKLQEQELRKRPDIVIATPGRFID 393
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 247
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAA 303
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFK 617
I++ V+DEAD ML GF D+++++ +
Sbjct: 406 IEIMVMDEADRMLEDGFADELNEIIQ 431
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.2 bits (122), Expect = 4e-08
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKTA F I +++ + +++ +ALIL+P RELA Q KVV + + A +GG
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGG 176
Query: 430 TNVREDIRQLEXGVHVVVGTPGR 498
++ E L +VV TPGR
Sbjct: 177 VSLEEQFSLLSGKPDIVVATPGR 199
Score = 42.7 bits (96), Expect = 5e-05
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMART 115
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.8 bits (116), Expect = 2e-07
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Frame = +1
Query: 256 TGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKVVIALGD----HLN 402
+GKT + + I+Q++ T A+I+APTREL QQI V L + H
Sbjct: 189 SGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWI 248
Query: 403 AKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C+ IGG + + ++ GV++++GTPGR+ D
Sbjct: 249 VSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLAD 282
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 522 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLFS 629
AL + ++ VLDE D ++ GF++ + + L S
Sbjct: 289 ALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLES 324
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
A+I+ PTRELA QI + LN + GG +++ I L+ G +VV TPGR+
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMI 553
Query: 505 D 507
D
Sbjct: 554 D 554
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLL 274
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++ K +
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 275 SL 280
L
Sbjct: 472 FL 473
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQI 602
R + + VLDEAD M GF+ Q+
Sbjct: 562 RVTNLHRCTYLVLDEADRMFDLGFEPQV 589
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F + +++ + TS+ AL+++PTRELA Q + ++ +G + I
Sbjct: 87 SGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLII 146
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRV 501
GG N +E+ +L ++++V TPGR+
Sbjct: 147 GGNNYKEEKERLSR-MNILVCTPGRL 171
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
+++ +LDEAD +L GF+ + + L
Sbjct: 186 LQMLILDEADRILDMGFRTTLDAIVSSL 213
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/60 (41%), Positives = 31/60 (51%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+LAPTRELA QIQ+ G + GG IR L GV + + TPGR+ D
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVI 238
V TF++ +L+ + GFE P+ IQQ+A + GRD++
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDV 611
+ VLDEAD ML GF+ QI +
Sbjct: 270 VTYLVLDEADRMLDMGFEPQIRKI 293
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 46.0 bits (104), Expect = 6e-06
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F +I +L + R +I++PTRELA QI V L + + I
Sbjct: 137 SGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVI 196
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG N R + +L GV+++V TPGR+ D
Sbjct: 197 GGANRRAEADKLVKGVNLLVATPGRLLD 224
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++ K L L
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
++ V+DEAD +L GF+D++ + K+L
Sbjct: 237 LRSLVIDEADRILEIGFEDEMRQIMKIL 264
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 45.6 bits (103), Expect = 8e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQART 60
Score = 40.3 bits (90), Expect = 3e-04
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = +1
Query: 256 TGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+ L +
Sbjct: 62 SGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRF 121
Query: 418 CIGGTNVREDIRQ--LEXGVHVVVGTPGR 498
TN + +++ L +V+ TP R
Sbjct: 122 INVATNSSDTVQRPLLLDLPDIVIATPSR 150
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 498 CI**ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
C+ + L + +K V+DEAD MLS G+ + + + + L
Sbjct: 151 CVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSL 192
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/78 (37%), Positives = 42/78 (53%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
LILAPTREL QI + + A GG ++R IRQ++ G ++ TPGR+ D
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 508 R*LVVRFMPTPSNFLFLM 561
L+ R + +N FL+
Sbjct: 319 --LIDRGRISLANIKFLV 334
Score = 33.1 bits (72), Expect = 0.044
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDV 611
I R + IK VLDEAD ML GF+ QI +
Sbjct: 320 IDRGRISLANIKFLVLDEADRMLDMGFEPQIRHI 353
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.0 bits (99), Expect = 2e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
+GKT F I LQ ++ + + L+++PTRELA Q + + +L N K G
Sbjct: 213 SGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYG 272
Query: 427 GTNVREDIRQLEXGVHVVVGTPGRVYD 507
G E R + V++GTPGR+ D
Sbjct: 273 GAPKSEQARAAK-NASVIIGTPGRLLD 298
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 522 ALHANTIKLFVLDEADEMLSRGFKDQIHDV 611
++ + + VLDEAD ML GF+ I ++
Sbjct: 304 SIDCSQVGYLVLDEADRMLDTGFEQDIRNI 333
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.9 bits (89), Expect = 4e-04
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
S+ +GKT ++ I I+Q + ++ + +++ PTREL Q+ K + A
Sbjct: 179 SAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCA 238
Query: 418 CIGGTNVREDIRQL-----EXGVHVVVGTPGRVYD 507
G ++R + QL E + V+V TPGR+ D
Sbjct: 239 WTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVD 273
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDV 611
++ V+DEAD +L + F+D + V
Sbjct: 286 LRYMVIDEADRLLDQSFQDWVDTV 309
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAK-CHA 417
+P +GKT + ILQ++ + +A+I+APTREL +QI + L + K
Sbjct: 90 APTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIEL 149
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRV 501
++E +L + +GTP R+
Sbjct: 150 SKSNEKIQEKAPKLREKYDMCIGTPMRL 177
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQ 599
++ FV+DEAD + GF +Q
Sbjct: 190 VEFFVMDEADRLFEPGFIEQ 209
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 36.7 bits (81), Expect = 0.004
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKT F + + + + + ++IL+PTRELA QI + L +
Sbjct: 87 TGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYA 146
Query: 421 IGG-TNVREDIRQLEXGVHVVVGTPGRVYDR*LVVRFMPTPSNFLFLM 561
IGG + +RE+ ++++ TPGR+ D R + + S F++
Sbjct: 147 IGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFIL 194
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDV 611
R L + + F+LDEAD ++ GF + I ++
Sbjct: 182 RILESLSTDSFILDEADRLMDMGFAESILNI 212
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.019
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Frame = +1
Query: 256 TGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL----------GDH 396
+GKT + + ++ DT ALI+APTRELA QI V L G
Sbjct: 49 SGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKK 108
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRV 501
L A + GT + E VV+GTPGR+
Sbjct: 109 LVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRL 143
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
+++ +LDEAD ++ GF+ + + L
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQL 182
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.54
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 86 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 232
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 83 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 175
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 235 YRSSPVRTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALG 390
Y S+ ++TG T + I Q IDT I QA ++ + L Q + + A+G
Sbjct: 131 YTSNEIKTGYVITETPKISQNIDTGITIPTQAPLVPQRKNLRQHFRPIGDAVG 183
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 285 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 386
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 561 EADEMLSRGFKDQIHDVFKMLFS*CSSHITLCYHGLM 671
E D ++ +D +DV +L SS I LC H LM
Sbjct: 317 EYDFLVPSKIQDYFYDVHSLLLKNLSSKIKLCNHILM 353
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 60 DLREWTLGHLTPT 98
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 640 LEHQLNNILKTSWIWSLKPLDNISSASSRTKSLMVL 533
+EH+ ++T ++ +KP+ + S S T L +L
Sbjct: 90 IEHENKENIQTEKVYRIKPVQRVLSPSDLTNELTIL 125
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 399 QVITKSYHHLLNLLGQLSCGSQDQ 328
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 364 IQKVVIALGDHLNAKCHACIGGTNVRED 447
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 607 SWIWSLKPLDNISSASSRTKSLMVLA*SARRVIYHIH-DLE 488
S IW + ++ S S+ + LM L R +IY +H DLE
Sbjct: 63 SEIWEDEEEEDNSGIVSQNERLMKLVNKQREIIYELHKDLE 103
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 459 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 358
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 80 QGPFPEVHRNYLDPSMAHFWNPLANL 3
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEM 575
R + A+T K+ +LDEAD M
Sbjct: 114 RQIFASTFKMIILDEADAM 132
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +1
Query: 331 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGT 489
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 259 GKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 369
G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 91 GSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 89 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 229
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,060
Number of Sequences: 5004
Number of extensions: 70962
Number of successful extensions: 244
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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