Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0278.Seq
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 130 7e-31
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 128 3e-30
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 127 7e-30
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 113 2e-25
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 105 4e-23
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 83 1e-16
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 83 1e-16
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 83 2e-16
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 83 2e-16
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 77 1e-14
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 63 2e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 62 3e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 62 5e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 61 9e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 61 9e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 61 9e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 60 2e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 3e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 57 1e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 57 1e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 56 3e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 56 3e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 55 6e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 54 8e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 54 8e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 54 8e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 54 8e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 54 8e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 54 8e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 54 1e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 54 1e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 53 2e-07
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 53 2e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 52 5e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 52 5e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 51 9e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 51 9e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 51 9e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 50 2e-06
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 48 5e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 7e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 47 1e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 47 1e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 47 1e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 47 2e-05
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 46 2e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 46 3e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 45 6e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 44 1e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 6e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 6e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 0.001
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 41 0.001
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.009
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 37 0.012
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.017
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 36 0.029
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 36 0.038
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.15
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 33 0.20
At3g10020.1 68416.m01202 expressed protein 33 0.27
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 31 0.82
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.4
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 29 4.4
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 4.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 29 4.4
At5g01400.1 68418.m00053 expressed protein contains low similari... 28 7.7
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 7.7
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 7.7
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 130 bits (315), Expect = 7e-31
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+
Sbjct: 87 TGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS 146
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
VRED R L+ GVHVVVGTPGRV+D
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFD 170
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +2
Query: 92 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQS
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQS 85
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/38 (68%), Positives = 35/38 (92%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLL 209
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 128 bits (310), Expect = 3e-30
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+
Sbjct: 89 TGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTS 148
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
VRED R L+ GVHVVVGTPGRV+D
Sbjct: 149 VREDQRVLQSGVHVVVGTPGRVFD 172
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/57 (64%), Positives = 46/57 (80%)
Frame = +2
Query: 83 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQS
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQS 87
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/38 (68%), Positives = 35/38 (92%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L
Sbjct: 174 LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLL 211
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 127 bits (307), Expect = 7e-30
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+
Sbjct: 87 TGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTS 146
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
VRED R L+ GVHVVVGTPGRV+D
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFD 170
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2
Query: 92 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQS
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQS 85
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/38 (65%), Positives = 34/38 (89%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ R++L + IK+FVLDEADEMLSRGFKDQI+D+F++L
Sbjct: 172 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLL 209
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 113 bits (271), Expect = 2e-25
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +
Sbjct: 83 TGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS 142
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
V EDIR+LE GVHVV GTPGRV D
Sbjct: 143 VGEDIRKLEHGVHVVSGTPGRVCD 166
Score = 85.0 bits (201), Expect = 5e-17
Identities = 37/54 (68%), Positives = 47/54 (87%)
Frame = +2
Query: 92 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQS
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQS 81
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
I RR+L IKL +LDE+DEMLSRGFKDQI+DV++ L
Sbjct: 168 IKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYL 205
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 105 bits (251), Expect = 4e-23
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG +
Sbjct: 70 TGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKS 129
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+ EDI++LE GVH V GTPGRVYD
Sbjct: 130 IGEDIKKLERGVHAVSGTPGRVYD 153
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/48 (60%), Positives = 43/48 (89%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQS
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQS 68
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
I R +L +KL VLDE+DEMLS+G KDQI+DV++ L
Sbjct: 155 IKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRAL 192
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL + GGT+
Sbjct: 179 TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTS 238
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+++DI +L VH++VGTPGR+ D
Sbjct: 239 LKDDIMRLYQPVHLLVGTPGRILD 262
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKN 177
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKTA F I +L++ID QA+I+ PTRELA Q +V LG HL + GGT+
Sbjct: 179 TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTS 238
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+++DI +L VH++VGTPGR+ D
Sbjct: 239 LKDDIMRLYQPVHLLVGTPGRILD 262
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKN 177
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F I +L++ID + QA+IL PTRELA Q +V L +LN + GGT+
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH++VGTPGR+ D
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILD 255
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 170
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F I +L++ID + QA+IL PTRELA Q +V L +LN + GGT+
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH++VGTPGR+ D
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILD 255
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 170
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
TGKT F I L++ID QA+IL PTRELA Q +V L +L + GGT+
Sbjct: 202 TGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTS 261
Query: 436 VREDIRQLEXGVHVVVGTPGRVYD 507
+R+DI +L VH++VGTPGR+ D
Sbjct: 262 LRDDIMRLYQPVHLLVGTPGRILD 285
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 200
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.9 bits (146), Expect = 2e-10
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKT F I I+ +I R L+LAPTRELA+Q++K L+ C
Sbjct: 152 TGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC-- 209
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT + + +RQL+ GV V VGTPGRV D
Sbjct: 210 LYGGTPIGQQMRQLDYGVDVAVGTPGRVID 239
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
R AL+ + ++ VLDEAD+ML GF + + + + L
Sbjct: 243 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL 278
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 435
+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG LN +C +GG +
Sbjct: 106 SGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMD 165
Query: 436 VREDIRQLEXGVHVVVGTPGRV 501
+ L H+V+ TPGR+
Sbjct: 166 MLTQTMSLVSRPHIVITTPGRI 187
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 543 KLFVLDEADEMLSRGFKDQIHDVFKML 623
K VLDEAD +L GF+D++ +F+ L
Sbjct: 205 KFLVLDEADRVLDVGFQDELRTIFQCL 231
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+ + L E + G KP+ +Q + + GRDV+ AQ+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQT 104
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 61.7 bits (143), Expect = 5e-10
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKT F I I+ +I + Q L+LAPTRELA+Q++K L+ C
Sbjct: 164 TGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC-- 221
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GGT + + +R+L G+ V VGTPGR+ D
Sbjct: 222 LYGGTPIGQQMRELNYGIDVAVGTPGRIID 251
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
R AL+ + ++ VLDEAD+ML GF + + + + L
Sbjct: 255 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 436 VR--EDIRQLEXGVHVVVGTPGRV 501
++ +D+ + E H+VVGTPGRV
Sbjct: 155 IKIHKDLLKNEC-PHIVVGTPGRV 177
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/49 (51%), Positives = 28/49 (57%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEK 265
F D LK ELLR I GFE PS +Q I I G DVI QA+S + K
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGK 96
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 12 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 71
Query: 436 VR--EDIRQLEXGVHVVVGTPGRV 501
++ +D+ + E H+VVGTPGRV
Sbjct: 72 IKIHKDLLKNEC-PHIVVGTPGRV 94
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 436 VR--EDIRQLEXGVHVVVGTPGRV 501
++ +D+ + E H+VVGTPGRV
Sbjct: 155 IKIHKDLLKNEC-PHIVVGTPGRV 177
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/49 (51%), Positives = 28/49 (57%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEK 265
F D LK ELLR I GFE PS +Q I I G DVI QA+S + K
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGK 96
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 60.1 bits (139), Expect = 2e-09
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +1
Query: 211 ALHPRTRCYRSSPVRTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 381
AL R C S+ +GKTA F++ L+++ + + LIL PTRELA QI ++
Sbjct: 201 ALTGRDLC-ASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQ 259
Query: 382 ALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L + KC +GG +VRE L +VV TPGR+ D
Sbjct: 260 NLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 247
+TF ++NL LLR G++KP+ IQ I + GRD+ A A
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASA 211
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG + + +GG
Sbjct: 76 SGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGG 135
Query: 430 TNVREDIRQLEXGVHVVVGTPGRV 501
++ + +L G V++ TPGR+
Sbjct: 136 DSMEDQFEELTKGPDVIIATPGRL 159
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+ +NL + I G++ P+ IQ++ + + G DV+A A++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMART 74
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 537 TIKLFVLDEADEMLSRGFKDQIHDVFKML 623
T++ V DEAD + GF +Q+H + L
Sbjct: 173 TVEYVVFDEADSLFGMGFAEQLHQILTQL 201
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDH 396
S+ +GKTA+F + I+ + T R A++LAPTREL Q++ LG
Sbjct: 153 SADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG 212
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L K +GG + + +++ GV +++GTPGRV D
Sbjct: 213 LPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD 249
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+++ + + I FVLDE D ML RGF+DQ+ +F+ L
Sbjct: 251 LSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL 288
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDH 396
S+ +GKTA+F + I+ + T R A++LAPTREL Q++ LG
Sbjct: 16 SADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG 75
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L K +GG + + +++ GV +++GTPGRV D
Sbjct: 76 LPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD 112
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+++ + + I FVLDE D ML RGF+DQ+ +F+ L
Sbjct: 114 LSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL 151
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKC 411
+GKTA F + +L I + E + A+++APTRELAQQI++ + +L +
Sbjct: 361 SGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRV 420
Query: 412 HACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +GG ++ E ++ G +V+ TPGR+ D
Sbjct: 421 TSIVGGQSIEEQGLKITQGCEIVIATPGRLID 452
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAET 359
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDV 611
+ RR N VLDEAD M+ GF+ Q+ V
Sbjct: 454 LERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGV 487
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDH 396
C + +GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 569 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKP 628
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L +C GG+ V + I +L+ G +VV TPGR+ D
Sbjct: 629 LGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 665
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++ K L
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTL 581
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 54.8 bits (126), Expect = 6e-08
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQID------TSIREC----QALILAPTRELAQQIQKVVIALGDHLNA 405
TGKT F I I++++ T+ R + L+LAPTRELA+Q++K + +L+
Sbjct: 150 TGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLST 209
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
C GG + L GV VVVGTPGR+ D
Sbjct: 210 VC--VYGGVSYTIQQSALTRGVDVVVGTPGRIID 241
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
I R+L ++ VLDEAD+ML+ GF++ + + + L
Sbjct: 243 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENL 280
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 128 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
++L + L + G IQ+ ++P +QGRD+IA+A++ K L
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTL 154
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 54.4 bits (125), Expect = 8e-08
Identities = 37/94 (39%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 405
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
K GGT V + IR+LE GV ++V TPGR+ D
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLND 287
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 86 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQT 192
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ R + ++ LDEAD ML GF+ QI + + +
Sbjct: 289 LERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM 326
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/60 (45%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
LILAPTRELA QIQ + G C GG +++LE G +VV TPGR+ D
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++ K L
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL 487
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDV 611
+ L VLDEAD ML GF+ QI +
Sbjct: 582 VSLLVLDEADRMLDMGFEPQIRKI 605
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++ K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 617
R + I VLDEAD ML GF+ QI + K
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++ K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 617
R + I VLDEAD ML GF+ QI + K
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++ K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK 617
R + I VLDEAD ML GF+ QI + K
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 54.4 bits (125), Expect = 8e-08
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKVVIALGDHLNA 405
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 406 KCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
K GGT + + +R+LE GV ++V TPGR+ D
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLND 300
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +2
Query: 86 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQT 205
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ R + I+ LDEAD ML GF+ QI + + +
Sbjct: 302 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHL 399
+GKT F+I ILQ + + + + A +L+PTRELA QI + ALG +
Sbjct: 57 SGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADI 116
Query: 400 NAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ +C +GG + + L HV+V TPGR++D
Sbjct: 117 SLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD 152
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/51 (37%), Positives = 35/51 (68%)
Frame = +2
Query: 101 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQT 55
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QIQ + G C GG ++++E GV +VV TPGR+ D
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 152 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
R +Y+ GF PS IQ ++ +Q RD++A A++ K L
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTL 281
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 519 RALHANTIKLFVLDEADEMLSRGFKDQIHDV 611
+ + + + VLDEAD ML GF+ QI +
Sbjct: 369 KRISLHQVSYLVLDEADRMLDMGFEPQIRKI 399
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDH 396
C + +GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 436 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKA 495
Query: 397 LNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L C GG+ V + I +L+ G +VV TPGR+ D
Sbjct: 496 LGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 532
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++ K L
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTL 448
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+LAPTRELA QIQ+ G K GG +R L+ GV +V+ TPGR+ D
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDV 611
+ VLDEAD ML GF QI +
Sbjct: 247 VTYLVLDEADRMLDMGFDPQIRKI 270
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT- 432
+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G + +
Sbjct: 142 SGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDST 201
Query: 433 -NVREDIRQLEXGVHVVVGTPG 495
R HVV+GTPG
Sbjct: 202 RGAPAATRGAPVSAHVVIGTPG 223
Score = 34.3 bits (75), Expect = 0.088
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQ---GRDVIAQAQS 253
F+D+NL EL++G+Y FEKPS IQ + +P I + +IAQA +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAIS-LPMIMTPPHKHLIAQAHN 140
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/89 (37%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKT + + L + R Q LILAPTRELA QIQ+ G +
Sbjct: 213 SGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCI 272
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG IR L GV +V+ TPGR+ D
Sbjct: 273 YGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLL 274
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++ K L
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 275 SL 280
L
Sbjct: 219 YL 220
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ VLDEAD ML GF+ QI + +
Sbjct: 313 VTYLVLDEADRMLDMGFEPQIRKIVSQI 340
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/89 (37%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKT + + L + R Q LILAPTRELA QIQ+ G +
Sbjct: 213 SGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCI 272
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG IR L GV +V+ TPGR+ D
Sbjct: 273 YGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLL 274
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++ K L
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 275 SL 280
L
Sbjct: 219 YL 220
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ VLDEAD ML GF+ QI + +
Sbjct: 313 VTYLVLDEADRMLDMGFEPQIRKIVSQI 340
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
A+IL+PTRELA QI K GGT + + +R+LE G ++V TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 505 D 507
D
Sbjct: 292 D 292
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ R + I+ LDEAD ML GF+ QI + + +
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVY 504
A+IL+PTRELA QI K GGT + + +R+LE G ++V TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 505 D 507
D
Sbjct: 292 D 292
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ R + I+ LDEAD ML GF+ QI + + +
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
L+L+PTRELA QI V+ G+ K GG++ I + GV +V+GTPGR+ D
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD 254
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
++TF + NL E +L FEKPS IQ + GRD+I A++ K L
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTL 166
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQI 602
I L + + VLDEAD ML GF++ +
Sbjct: 256 IESNVLRLSDVSFVVLDEADRMLDMGFEEPV 286
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +1
Query: 304 TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVV 483
T R + ++L PTREL++Q+ +V ++ H + GG+ +R L + +VV
Sbjct: 185 TKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVV 244
Query: 484 GTPGRV 501
GTPGR+
Sbjct: 245 GTPGRI 250
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Frame = +1
Query: 325 ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIGGTNVREDIRQLEXGVHVVVG 486
AL++ P+RELA+Q +++ V +L + + + CIGG ++R + ++ GVH+VV
Sbjct: 176 ALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVA 235
Query: 487 TPGRVYD 507
TPGR+ D
Sbjct: 236 TPGRLKD 242
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF 614
+ ++ + + +L LDEAD ++ GF+D I VF
Sbjct: 244 LAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVF 278
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLL 274
++ F DM LLR + G P+ IQ + + + GRD+I A + K L+
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 150
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/65 (40%), Positives = 34/65 (52%)
Frame = +1
Query: 313 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTP 492
R L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTP
Sbjct: 173 RSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTP 232
Query: 493 GRVYD 507
GR+ D
Sbjct: 233 GRIKD 237
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQI 602
I R+ L + ++ VLDEADEML GF + +
Sbjct: 239 IERQNLDFSYLQFRVLDEADEMLRMGFVEDV 269
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVV------IALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGT 489
LI+ P+RELA+Q +VV + + + CIGG ++R + ++ GVH+VV T
Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
Query: 490 PGRVYD 507
PGR+ D
Sbjct: 286 PGRLKD 291
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 510 ITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF 614
+ ++ + + + LDEAD ++ GF+D I +VF
Sbjct: 293 LAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVF 327
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +2
Query: 101 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++ K L L
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 281 YRFYNKSIQA 310
K A
Sbjct: 102 LPLLQKLFSA 111
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 531 ANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ ++ + VLDEAD +LS G++D + V ++
Sbjct: 198 SESLSILVLDEADLLLSYGYEDNLRSVTSII 228
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +1
Query: 256 TGKTATFSISILQQIDT--SIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+GKT + + +LQ++ + S+ + + A IL P+REL QQ+ V +L + + A
Sbjct: 94 SGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKA 153
Query: 418 C-IGGTNVREDIRQLEXGV-HVVVGTP 492
+ + D+R G+ ++V TP
Sbjct: 154 VQLTSSMSASDMRNALAGLPEILVSTP 180
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+++ PTRELA Q + V L H + IGG N R + +++ G ++V+ TPGR+ D
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++ K L L
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFL 144
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
+K V+DEAD +L F++ ++ + K+L
Sbjct: 237 LKCLVIDEADRILEENFEEDMNKILKIL 264
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCH 414
+GKT F + ++ I S + +I++PTREL+ QI KV L N
Sbjct: 64 SGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSV 123
Query: 415 ACIGGTNVREDIRQL-EXGVHVVVGTPGRVYD 507
+GG V D+ L E G ++++GTPGR+ D
Sbjct: 124 LLVGGREVEADMNTLEEEGANLLIGTPGRLSD 155
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
L +++ +LDEAD +L GF+ Q++ + L
Sbjct: 163 LDFRNLEILILDEADRLLDMGFQKQVNYIISRL 195
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKTA F + ++ I ++ + +I APTRELA QI + A
Sbjct: 276 SGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAV 335
Query: 421 IGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + E ++L+ G +VV TPGR+ D
Sbjct: 336 YGGMSKHEQFKELKAGCEIVVATPGRLID 364
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKT 274
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCH 414
+GKT F + +++ + S + +I++PTREL+ QI V L N
Sbjct: 64 SGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSV 123
Query: 415 ACIGGTNVREDIRQLEX-GVHVVVGTPGRVYD 507
+GG V+ D++ +E G +V++GTPGR+ D
Sbjct: 124 LLVGGREVKADMKIIEEEGCNVLIGTPGRLSD 155
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
L +++ +LDEAD +L GF+ Q++ + L
Sbjct: 163 LDFRNLEILILDEADRLLEMGFQRQVNYIISRL 195
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+SP +GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A+ + +
Sbjct: 68 NSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGS 127
Query: 418 CIGGTNVREDIRQL 459
+G +++ +I QL
Sbjct: 128 AVGQSSIAGEISQL 141
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +1
Query: 322 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGRV 501
+ALI+ PTRELA Q+ + + +L+ K +GG + R+L+ +VV TPGR+
Sbjct: 281 RALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Query: 502 YD 507
++
Sbjct: 341 WE 342
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 516 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
+ + +++ FVLDEAD M+ RG ++ + +L
Sbjct: 349 KHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.5 bits (93), Expect = 6e-04
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F ++ +L ++ + R L++ PTRELA Q V L + + I
Sbjct: 202 SGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVI 261
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
GG + + L GV+++V TPGR+ D
Sbjct: 262 GGEKRKTEAEILAKGVNLLVATPGRLLD 289
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++ K L L
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFL 209
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLE-XGVHVVVGTPGRV 501
LIL PTRELA QI A L +H IGGT R D ++LE +++ TPGR+
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 502 YD 507
D
Sbjct: 516 LD 517
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
+KLF++DEAD +L GFK + + L
Sbjct: 532 LKLFIVDEADLLLDLGFKRDVEKIIDCL 559
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
FD+ + L+ + A G K + +Q + C+ G+D + +A++ K + L
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFL 430
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+GKT F + ++ I S + +I++PTREL+ QI KV A+ AKC
Sbjct: 65 SGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-AKCRE 123
Query: 418 CIGGTNVREDIRQLEXGVHVVVGTPGRVYD 507
N E E G ++++GTPGR+ D
Sbjct: 124 VEADMNTLE-----EEGANLLIGTPGRLSD 148
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 623
L +++ +LDEAD +L GF+ Q++ + L
Sbjct: 156 LDFRNLEILILDEADRLLDMGFQKQVNYIISRL 188
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +1
Query: 325 ALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVREDIRQLE-XGVHVVVGTP 492
ALIL PTRELA QI K ++ D + + IGGT + D ++LE +++ TP
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLESEPCQILIATP 465
Query: 493 GRVYD 507
GR+ D
Sbjct: 466 GRLLD 470
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
FD+ + L+ + A G K + +Q + C+ G+D + +A++ K + L
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFL 383
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
+KLF++DEAD +L GF+ + + L
Sbjct: 485 LKLFIVDEADLLLDLGFRRDVEKIIDCL 512
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 316 ECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTN-VREDIRQLEXGVHVVVGT 489
E QA+I+AP+REL QI ++V LG +GG N +R++ + +VVGT
Sbjct: 191 EIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGT 250
Query: 490 PGRV 501
PGR+
Sbjct: 251 PGRI 254
Score = 34.7 bits (76), Expect = 0.067
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ + K L L
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYL 165
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 525 LHANTIKLFVLDEADEMLSRGFKDQIHDVFK 617
LH + + VLDE DE+LS F++ IH + +
Sbjct: 263 LHTHGCRFLVLDEVDELLSFNFREDIHRILE 293
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 375
C + +GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 116 CILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIALGDHLN 402
++P TGKT + ++ + + AL++ PTREL Q+ + + L +
Sbjct: 73 NAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFH 132
Query: 403 AKCHACI-GGTNVREDIRQLEXGVHVVVGTPGRVYD 507
+ GG ++ +L G+ +++ TPGR+ D
Sbjct: 133 WIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 170 GFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
GFE P+ +Q +AI + GRDV+ A + K + L
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYL 85
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 36.7 bits (81), Expect = 0.017
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQIQKVVIA 384
C + +GKT + + ++Q++ S C + ++L PT ELA Q+ +
Sbjct: 414 CIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRS 473
Query: 385 LG-DHLNAKCHACIGGTNVREDIRQLEXGVHVVVGTPGR 498
+ + + GG R + LE GV V++ TPGR
Sbjct: 474 ISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGR 512
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 35.9 bits (79), Expect = 0.029
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTS---IRECQ-----ALILAPTRELAQQ-IQKVVIALGDHLNAK 408
TGKT F + ++ + S R+ + L++ PTRELA Q + L H +
Sbjct: 430 TGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIG 489
Query: 409 CHACIGGTNVREDIRQLEXG-VHVVVGTPGRVYD 507
IGGT + + R+++ ++V TPGR+ D
Sbjct: 490 VQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKD 523
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +2
Query: 56 DGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDV 235
D P G T D+ + FD L L+ I GFE + +Q+ + +QG+DV
Sbjct: 365 DKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDV 422
Query: 236 IAQAQSELEKLLLSL 280
+A+A++ K + L
Sbjct: 423 LAKAKTGTGKTVAFL 437
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDV 611
+K+ VLDEAD +L GF+ I +
Sbjct: 538 VKVLVLDEADHLLDMGFRRDIERI 561
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 35.5 bits (78), Expect = 0.038
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQKVVIALGDHLNAK 408
TGKT F + ++ + D AL++ PTRELA Q + L H +
Sbjct: 102 TGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIG 161
Query: 409 CHACIGGTNVREDIRQLEXG-VHVVVGTPGRVYD 507
IGGT + + ++++ ++V TPGR+ D
Sbjct: 162 VQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKD 195
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
FD L L+ I G+E + +Q+ + ++G+DV+A+A++ K + L
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFL 109
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDV 611
+K+ VLDEAD +L GF+ I +
Sbjct: 210 VKVLVLDEADHLLDMGFRKDIERI 233
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
FD L L+GI GF+ + +Q+ + +QG+D++A+A++ K + L
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFL 135
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDV 611
+K+ VLDEAD +L GF+ +I +
Sbjct: 236 VKVLVLDEADHLLDMGFRREIERI 259
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F I IL+++ + +I++PTRELA Q V+ +G I
Sbjct: 119 SGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLI 178
Query: 424 GGTNVREDIRQLEXGVHVVVGTPGRV 501
GG + ++ ++++V PGR+
Sbjct: 179 GGREGVDVEKERVHEMNILVCAPGRL 204
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 540 IKLFVLDEADEMLSRGFKDQIHDVFKML 623
+++ +LDEAD +L FK Q+ + L
Sbjct: 219 LQILILDEADRVLDSAFKGQLDPIISQL 246
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 29 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 202
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 203 AIMPCIQGR 229
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDT-SIRECQALILAPTRELAQQ 363
C+ +P +GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 146 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 247
+LR + GF++P+ IQ++AI + GR+ A A
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACA 185
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 277 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 429
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 432
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 211 ALHPRTRCYRSSPVRTGKTATFSISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIA 384
+L P YRS+ + A + S +++ +++EC +A+ P+ A Q++ + +
Sbjct: 239 SLSPENPAYRSN-----RAAALAAS--GRLEEAVKECLEAVRCDPSYARAHQRLASLYLR 291
Query: 385 LGDHLNAKCHACIGG 429
LG+ NA+ H C+ G
Sbjct: 292 LGEAENARRHLCVSG 306
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -1
Query: 235 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 134
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 505 HIHDLECPPXHEHXSPVGEYLHGHWCHQCKHGI*HSSDHQ 386
H H+ EC H+H H H +C H H SDHQ
Sbjct: 606 HKHE-ECNHNHDHE----HQSHSHNHEECNHNHDHHSDHQ 640
>At5g01400.1 68418.m00053 expressed protein contains low similarity
to symplekin SP:Q92797 from [Homo sapiens]
Length = 1467
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 631 QLNNILKTSWIWSLKPLDNISSAS 560
+LN++L++SW W +K D I S +
Sbjct: 127 ELNDLLESSWTWLIKFKDEICSVA 150
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 373 VVIALGDHLNAKCHACIGGTNVREDIRQLEXGVHVVVG 486
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 89 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
DT + ++ + L + + + GF++PS Q I + G+DVI A++
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAET 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,693,116
Number of Sequences: 28952
Number of extensions: 385173
Number of successful extensions: 1187
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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