Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0277.Seq
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0153 - 12319853-12319948,12320277-12320536,12320920-12320977 31 0.75
06_03_1476 - 30399317-30399347,30399636-30399722,30400035-304001... 29 4.0
11_04_0369 - 16885918-16886080,16886235-16886671,16886767-168870... 29 5.3
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728 29 5.3
05_07_0097 - 27666456-27666719,27666837-27667022,27667233-276673... 29 5.3
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 7.0
02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211... 28 7.0
12_02_0664 - 21659497-21659547,21659750-21659860,21659971-216600... 28 9.3
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 28 9.3
05_04_0053 + 17520202-17520984 28 9.3
>06_02_0153 - 12319853-12319948,12320277-12320536,12320920-12320977
Length = 137
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 660 LVETSSRLCRPPRTLLCTRAVLASSWQGSFSRKLKEKRQ 544
+ +T+S L P R + RA+ AS W R LK+ RQ
Sbjct: 44 MADTTSCLASPTRHVAAERAIPASMWPTEVERVLKQHRQ 82
>06_03_1476 -
30399317-30399347,30399636-30399722,30400035-30400192,
30400276-30400497,30400744-30400881,30400977-30401105,
30401346-30401369,30401569-30401614,30401692-30401773,
30401836-30401955,30402039-30402072
Length = 356
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 513 LCDX*AYVRPAILRDERSLIPDVERSTSCPTNYC 412
+CD AY R IL ER ++ ++ S PT YC
Sbjct: 252 ICDR-AYTRTDILEMERMIVNTLQFDMSVPTPYC 284
>11_04_0369 -
16885918-16886080,16886235-16886671,16886767-16887028,
16887050-16887353,16887771-16888166,16888531-16888579,
16889303-16889737
Length = 681
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 579 LAMMTPTLPGYKVECVGDDIAWMKFRQ 659
+A + T+P Y ++C+ D +W+ F+Q
Sbjct: 242 VAKLVQTMPFYYLDCLSSDDSWLLFQQ 268
>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
Length = 951
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -3
Query: 712 NSQRTRFPGLMAPEVRRPCRNF---IQAMSSPTH 620
N +R RF L A E R PCR F IQ MSS H
Sbjct: 847 NLERFRF-NLKARETRNPCRQFFLSIQQMSSLKH 879
>05_07_0097 -
27666456-27666719,27666837-27667022,27667233-27667387,
27667488-27667620,27667718-27667908,27668078-27668513
Length = 454
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 691 PGLMAPEVRRPCRNFIQAMSSPTHSTLYPGSV 596
P L PE+ R C +F ++S + T+Y G++
Sbjct: 148 PQLQRPELERACEDFSNIVASHPYYTVYKGTL 179
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 94 GMKLNGMG*DGRTMYVIPFSMGPVGSPLSKIGVEITDSPY 213
G + G G T PF+ P GSP++ G + +SP+
Sbjct: 25 GAQTGGFG-QANTTTTNPFAPKPFGSPITAFGAQTGNSPF 63
>02_01_0315 -
2111095-2111241,2111496-2111579,2111803-2111883,
2112133-2112310,2112447-2112623,2112688-2112734,
2112845-2112901,2113339-2113437,2113696-2113818,
2113895-2114017,2114241-2114264,2115096-2115209,
2115315-2115503,2115691-2115857,2116846-2116930,
2117698-2117778,2118239-2118424,2119266-2119314,
2119777-2119810,2120087-2120153,2120198-2120419
Length = 777
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 701 NPFSGV-NGPGSTPXLSKLHPGYVVPHALYFVPGQCWRHHGKVRFPAS 561
+P GV + G+ P L +L +++P+ L F PG+ W H V P S
Sbjct: 212 SPVLGVFDWSGNNPLLPEL---WMLPYFLPFHPGRIWSHCRMVYLPMS 256
>12_02_0664 -
21659497-21659547,21659750-21659860,21659971-21660039,
21660442-21660513,21660669-21660749,21661256-21661348,
21661581-21661733,21661846-21661897,21662033-21662218,
21662830-21662949,21663059-21663297
Length = 408
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 189 RRNHGFALRGLFYASHD*NWSEVLEILRQDEQF 287
R H F RGLF+A D N E+L++ + E+F
Sbjct: 65 RPPHRFLRRGLFFAHRDLN--EILDLYEKGEKF 95
>06_03_0437 - 20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 133 MY-VIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAKF*KFYVKTSSSFVVFTQS 309
MY +P+++ V + + V+ +VY+M AKF F+ + SF+ FT
Sbjct: 954 MYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVSYFSFLYFTYY 1013
Query: 310 APVALRVGP 336
+ + + P
Sbjct: 1014 GMMTVAISP 1022
>05_04_0053 + 17520202-17520984
Length = 260
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 431 LAQQTIAAVSTAVAYDLVLSRLVEYDGVLRVAGPTRS 321
++ T AA++T V+Y +V R+V V V+GP RS
Sbjct: 183 VSPDTAAALATDVSYGVVALRVVVLGRVRFVSGPFRS 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,997,392
Number of Sequences: 37544
Number of extensions: 454790
Number of successful extensions: 1248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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