Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0277.Seq
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                      174   6e-44
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                       174   7e-44
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                      163   1e-40
SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7)                   30   2.3  
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7)                     28   7.2  
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   9.5  
SB_22682| Best HMM Match : C1_4 (HMM E-Value=2.2)                      28   9.5  

>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score =  174 bits (424), Expect = 6e-44
 Identities = 90/152 (59%), Positives = 102/152 (67%), Gaps = 5/152 (3%)
 Frame = +3

Query: 249 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHKPAENEIVXXXXXXXX 413
           S VL+ L  D  FVRCLH+VG     G     WPCDP+ T+I H P   EI         
Sbjct: 40  SHVLKALG-DGDFVRCLHSVGGPLHDGKNNVPWPCDPERTLITHFPETREIKSYGSGYGG 98

Query: 414 XXXXXKKCFALRLGSVIARREGWLAEHMLXRRITNPQGKKRYIAAAFPSACGKTNLAMMT 593
                KKCFALR+ SVIAR EGWLAEHM+   +TNP+GKK YIAAAFPSACGKTNLAM+T
Sbjct: 99  NSLLGKKCFALRIASVIARDEGWLAEHMMILGLTNPEGKKIYIAAAFPSACGKTNLAMLT 158

Query: 594 PTLPGYKVECVGDDIAWMKFRQGRRTSGAINP 689
           PT+PG+K ECVGDDIAWM F +   T  AINP
Sbjct: 159 PTIPGWKCECVGDDIAWMWFDKD-GTLRAINP 189



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 30/40 (75%), Positives = 37/40 (92%)
 Frame = +1

Query: 133 MYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGA 252
           MYV+PFSMGPVGSP+SKIG+E+TDS YVV  MR+MTR+G+
Sbjct: 1   MYVMPFSMGPVGSPISKIGIELTDSEYVVCCMRIMTRMGS 40


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score =  174 bits (423), Expect = 7e-44
 Identities = 88/152 (57%), Positives = 104/152 (68%), Gaps = 5/152 (3%)
 Frame = +3

Query: 249 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHKPAENEIVXXXXXXXX 413
           S VL+ L Q + FV+CLH+VG     G     WPCDP  TII H PA+N I         
Sbjct: 354 SHVLKALDQGD-FVKCLHSVGKPLKEGEKDVLWPCDPDRTIITHFPADNYIKSFGSGYGG 412

Query: 414 XXXXXKKCFALRLGSVIARREGWLAEHMLXRRITNPQGKKRYIAAAFPSACGKTNLAMMT 593
                KKCFALR+ S IA +EGWLAEHML   +TNP+GKK+YIAAAFPSACGKTNLAM+ 
Sbjct: 413 NSLLGKKCFALRIASNIALKEGWLAEHMLIMALTNPEGKKKYIAAAFPSACGKTNLAMLK 472

Query: 594 PTLPGYKVECVGDDIAWMKFRQGRRTSGAINP 689
           PT+PG+KV+CVGDDIAWM F +  +   AINP
Sbjct: 473 PTIPGWKVDCVGDDIAWMWFDKTGQLR-AINP 503



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 22/34 (64%), Positives = 31/34 (91%)
 Frame = +1

Query: 151 SMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGA 252
           +MGPVGSP++KIG+++TDS YVV  MR+MTR+G+
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGS 354


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score =  163 bits (396), Expect = 1e-40
 Identities = 86/152 (56%), Positives = 99/152 (65%), Gaps = 5/152 (3%)
 Frame = +3

Query: 249 SEVLEILRQDEQFVRCLHAVGSGGTPG-----WPCDPKNTIILHKPAENEIVXXXXXXXX 413
           S VL+ L  D  FVR +H+VG     G     WPCDP+ T+I H PA  EI         
Sbjct: 170 SHVLKALG-DGDFVRGVHSVGFPLKEGVKEVPWPCDPERTLITHFPATREIKSYGSGYGG 228

Query: 414 XXXXXKKCFALRLGSVIARREGWLAEHMLXRRITNPQGKKRYIAAAFPSACGKTNLAMMT 593
                KKCFALR+ S IA  EGWLAEHM+   +TNP+GKK YIAAAFPSACGKTNLAM+T
Sbjct: 229 NSLLGKKCFALRIASNIAHDEGWLAEHMMIMGLTNPEGKKIYIAAAFPSACGKTNLAMLT 288

Query: 594 PTLPGYKVECVGDDIAWMKFRQGRRTSGAINP 689
           PT+PG+K ECVGDDI WM F +   T  AINP
Sbjct: 289 PTIPGWKCECVGDDINWMWFDKD-GTLRAINP 319



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 32/43 (74%), Positives = 40/43 (93%)
 Frame = +1

Query: 124 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGA 252
           GRTMYV+PFSMGPVGSP+SKIG+++TDS YVV  MR+MTR+G+
Sbjct: 128 GRTMYVLPFSMGPVGSPISKIGIQLTDSEYVVCCMRIMTRMGS 170



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 652 FDKXGVLPGPLTPENGFFGSC--TRYVSR*RIPIAM 753
           FDK G L   + PE+GFFG C  T + S    PIAM
Sbjct: 308 FDKDGTLRA-INPESGFFGVCPGTTFTSN---PIAM 339


>SB_55205| Best HMM Match : DUF1270 (HMM E-Value=3.7)
          Length = 600

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +3

Query: 450 LGSVIARREGWLAEHMLXRRITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVEC-- 623
           LG  IAR    L +  L R I  P  +       F SAC     A + PT  G   E   
Sbjct: 312 LGQWIARPMNILVDGSLGRWIAGPMDRSGRRGRVFRSACVAKMAASVDPTALGNSAEAFL 371

Query: 624 VGDDIAW 644
           V D I W
Sbjct: 372 VPDVILW 378


>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +3

Query: 450 LGSVIARREGWLAEHMLXRRITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVEC-- 623
           LG  IAR    L +  L R I  P  +       F SAC     A + PT  G   E   
Sbjct: 312 LGQWIARPMNILVDGSLGRWIAGPMDRSGRRGRVFRSACVAKMAASVDPTALGNSAEAFL 371

Query: 624 VGDDIAW 644
           V D I W
Sbjct: 372 VPDVILW 378


>SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7)
          Length = 263

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -1

Query: 342 GRRANPECHRSRLREDNERTARLDVEFLELRSNSSHDSHRIN-HVRRIRDFY-ADLRERR 169
           GRRA+PE +   L +   R         E  +++S +  R+N   R  R    +++ +  
Sbjct: 127 GRRADPESNTDNLTKTKRRKRLFGGNQTEPVTDASLNEKRLNERFREHRSVIDSNVEDSA 186

Query: 168 SHRTHREWYHVH 133
           S R H E + VH
Sbjct: 187 STRRHHERFQVH 198


>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1321

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 569  ENEPCHDDANTARVQSRVRGGRHSLDEVST 658
            ++EP HDD     V  + RGGR + +E  T
Sbjct: 1156 DDEPLHDDEQDPNVAGQERGGRTNDEEDDT 1185


>SB_22682| Best HMM Match : C1_4 (HMM E-Value=2.2)
          Length = 321

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 480 ILRDERSLIPDVERSTSCPTNYCRRIHCRSL 388
           + R+ER  I DV + T    N+  R  CRSL
Sbjct: 187 LAREERRFIEDVLKGTDEFQNFLERFDCRSL 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,583,073
Number of Sequences: 59808
Number of extensions: 505075
Number of successful extensions: 1741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)