Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0277.Seq
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...   107   1e-25
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   1.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.4  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.5  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score =  107 bits (256), Expect = 1e-25
 Identities = 50/61 (81%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
 Frame = +3

Query: 510 ITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKF-RQGRRTSGAIN 686
           ITNP+GKKRYI AAFPSACGKTNLAMM PTLPGYK+ECVGDDIAWMKF ++GR    AIN
Sbjct: 4   ITNPKGKKRYITAAFPSACGKTNLAMMKPTLPGYKIECVGDDIAWMKFDKEGRLR--AIN 61

Query: 687 P 689
           P
Sbjct: 62  P 62



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 698 GSLGVAPGTSAA 733
           G  GVAPGTS+A
Sbjct: 65  GFFGVAPGTSSA 76


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 342 GRRANPECHRSRLREDNERTARLDVEFLELR 250
           G+  +PE  R R     E+ ARL  EF E R
Sbjct: 13  GKNGSPEEKRPRTAFSAEQLARLKREFAENR 43


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
 Frame = +3

Query: 579 LAMMTPTLPGYKVECVGDDIA----WMKFRQGRRTSGA-INPGKRVLWELHQVRQPL--T 737
           + M+T TLPG  V   GD+I     W  +++    +G    P K  L      R P    
Sbjct: 370 IVMLTLTLPGIGVVYNGDEIGMEDRWFTYQETVDPAGCNAGPAKYYLKSRDPERTPYQWD 429

Query: 738 NSDSNG 755
           NS S G
Sbjct: 430 NSTSAG 435


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 342 GRRANPECHRSRLREDNERTARLDVEFLELR 250
           G    PE  R R     E+ ARL  EF E R
Sbjct: 13  GNGGTPEEKRPRTAFSGEQLARLKREFAENR 43


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 123 WTHNVRDTIL 152
           WTHNV D +L
Sbjct: 163 WTHNVLDMVL 172


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 692 SGVNGPGSTPXLSKLHPGYVVPHALYFV 609
           +G+ G   +P  + L+   ++ H LY+V
Sbjct: 254 NGIYGIALSPVTNNLYYSPLLSHGLYYV 281


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 297 LHAVGSGGTPGWPCDPKNTII 359
           LHA+ SG     P +PK+T +
Sbjct: 408 LHALTSGKCEHRPFEPKSTAV 428


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 649 SFDKXGVLPGPLTP 690
           SF + G LP P+TP
Sbjct: 149 SFPRGGSLPTPVTP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,078
Number of Sequences: 438
Number of extensions: 4244
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)