Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0277.Seq
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16340.1 68416.m02066 ABC transporter family protein similar ...    29   4.4  
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    28   5.9  
At4g23760.1 68417.m03418 expressed protein                             28   5.9  
At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1...    28   5.9  
At2g36560.1 68415.m04484 DNA-binding protein-related contains Pf...    28   7.7  

>At3g16340.1 68416.m02066 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1416

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 133  MY-VIPFSMGPVGSPLSKIGVEITDSPYVVYSMRVMTRIGAKF*KFYVKTSSSFVVFTQS 309
            MY  +P+++  V   +  + ++ T    ++Y+M       AKF  FY  +  SF+ FT  
Sbjct: 1231 MYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYY 1290

Query: 310  APVALRVGP 336
              + + + P
Sbjct: 1291 GMMTVALTP 1299


>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 364 WSMMVFLGSQGQPGVPPEPTA*RQRTNCS 278
           W  +VFL SQ  P  PP   A R +  C+
Sbjct: 265 WGKVVFLPSQALPAPPPGHMAIRSKEGCN 293


>At4g23760.1 68417.m03418 expressed protein 
          Length = 187

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 209 GESVISTPIFERGDPTGPIENGITYIVRPSHPI 111
           GE+  ST +  RG PT  +  G+++  R   PI
Sbjct: 130 GETEYSTNLRPRGSPTSQLRRGVSFRSREMRPI 162


>At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 785

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 688 GLMAPEVRRPCRNFIQAMSSPTHSTLYPGSVGVIMARF 575
           GLM P   +  R  IQ +S P H  + P   G I  RF
Sbjct: 275 GLMFPREGKTYRTLIQRLSYPIHEFVLPVYFGYIGFRF 312


>At2g36560.1 68415.m04484 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 574

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +3

Query: 453 GSVIARREGWLAEHMLXRRITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGD 632
           GS+IA     +        ITN + K++Y++ A  +     NL   + T P  + E VG 
Sbjct: 207 GSLIAASPVQVVIGSFWPLITNSRQKRKYVSKAMVAPSITPNLVASSSTRPVQQPEMVGP 266

Query: 633 DIAWMKFRQGRRT 671
             +  +  +  RT
Sbjct: 267 SHSQKRNSESNRT 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,312,159
Number of Sequences: 28952
Number of extensions: 338990
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)