Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0276.Seq
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   6.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   6.5  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 47  CIYWFILL*WQQ-SYATTSNI 106
           CI +FI L WQQ S  TTS +
Sbjct: 17  CILFFIYLYWQQTSNLTTSKL 37


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = -3

Query: 744 LRRFVAPALGRLVNCP*RPVTFFSNVAPASLVELGSVPCLGCCLRFSCYFGSSCHSGRLC 565
           +R  V PA  RL+      +T  S   P +L   GSV     C  F     SS  + R  
Sbjct: 360 VRSPVTPADLRLLTRGRLVLTVSSVSKPEALRLSGSVVTKVTCELFQATLSSSSDTNRFG 419

Query: 564 LSWMQWL 544
            S + WL
Sbjct: 420 TSGLAWL 426


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 740 EGLLPPLWEG 711
           EG LPP+W+G
Sbjct: 217 EGRLPPVWQG 226


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 410 NNGKLQTDPFSGDHC 454
           N+G LQ DP SG  C
Sbjct: 303 NHGLLQGDPLSGCLC 317


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 429 PTRSPATTVPSAYDDPDP 482
           P   P T+  SA + PDP
Sbjct: 216 PAEFPTTSSSSALESPDP 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,232
Number of Sequences: 336
Number of extensions: 3272
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)